rs262634033 SNP Detail

Summary

• ID
  rs262634033
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:130039387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGAGTTTC AGTGGTCAGA
  GCAGTCTCTG TAGGCAAGGT CTTCTCTTTC AGCGAGGTGC ACAGTTATCT GGTGTTTGGA
  CCTCCTCCTG GCCGAAGATG AATGCCCAAA ACAGGATCTT TCCCAGAAGC TGTGTTGCTT
  TGGCCTGTCA CAGAAGCCGT TGTTTCAGTA GTCCACACTC TCACCTGTGT AGACTACTTT
  Y
  CGTGGAGTCC TGAAACCAAG GTGGCTTCTG CAGAACGTGA GGCAGAAGCC TCTTGGGCTG
  GACAGACACC TGTGCTCTGA CCAGGAAGGT GGCCGGTTGT CTGGAGCCGA AAATTTCACT
  GCCTTAGAGG CTCTGTGGCT CTCGCCCATC CCAGAAGCTG CTGGCCTCTG TGTTCCACAC
  TCTCACCCGC AGACCGCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	ST/bJ	SWR/J
ss351424099	MGP_WTSI_1_132008227	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	ST/bJ	SWR/J
rs262634033					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351424099	MGP_WTSI_1_132008227	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130039387 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr417893	regulatory region 417893			1013 bp proximal
Thsd7b	thrombospondin, type I, domain containing 7B			Intron
				Noncoding-Transcript-Variant