rs262642215 SNP Detail

Summary

• ID
  rs262642215
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:74722654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGGGCGGGC GGCGCCCTCG CTACCATTGA
  GGATGTGTGA ACCGGGGGAT GGGGAGAGGG ATGTTGATGT GTGGGGGTGG CAGACCCGCG
  TGTGCTTGCG TGTGAGCACC AAGATGATGT GTGATGGGAA CCGGGGAAGA GCGGATGAAC
  K
  GACCTGTACA CGGGTGTGTT TGTACAGCAC ACGAGTGGGC GTGTGCGTAA CTGAGTGGGG
  GTGGGGAATA CTCTACGCCG AGCTGCTCTT CGGATTCCCT GGCCTGGGCT GGAGGGTGCG
  GGGAGCGCTC CCGGCAGATC TACGCGCTGC                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323749910	CHEV_11_74645330	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262642215					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:74722654 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3246	CpG island 3246	within coordinates
Cpgi3247	CpG island 3247	909 bp proximal
Gm74357	predicted gene, 74357	1013 bp upstream
Mnt	max binding protein	within coordinates
Rr402717	regulatory region 402717	1297 bp downstream
Rr450976	regulatory region 450976	1723 bp distal
Rr450977	regulatory region 450977	898 bp distal
Rr450978	regulatory region 450978	831 bp distal
Rr450979	regulatory region 450979	590 bp distal
Tssr102911	transcription start site region 102911	925 bp downstream
Tssr102912	transcription start site region 102912	908 bp downstream
Tssr102913	transcription start site region 102913	823 bp downstream
Tssr102914	transcription start site region 102914	550 bp downstream
Tssr109144	transcription start site region 109144	1926 bp upstream
Tssr109145	transcription start site region 109145	1139 bp upstream
Tssr109146	transcription start site region 109146	24 bp upstream
Tssr109147	transcription start site region 109147	164 bp downstream
Tssr109148	transcription start site region 109148	354 bp downstream
Tssr109149	transcription start site region 109149	391 bp downstream