CAGGAGGAAG AACAGCTCCA GGGAGAATCG AGAAGACGGC AACAGGAGAG AGAGGGCAAG TTCCTTGAGG AGGAAAGGCA GCTGCGGACA GAACGGGAAG AGCAGAGGCG GCGTCAAGAA CAAGAGAGAG AATTCCAAGA GGAGGAGGAG CACCTCCAAG AACGCGAGAA AGAACTTCGG CAGGAATGCG ACAGAAAATC Y CGTGAACAAG AGCGCCGCCA GCAGCGTGAG GAAGAGCAGC TGAGGCGTCA GGAGCGGGAC CAGAGATTCC GTCGGGAACA AGAACGCCAC CTGGAACGTG AGGAAGAGCA GCTGCGGGAC AGACCATCCC GCCGGGAACA AGAACGCCAC CAGGAACGTG AGGAAGAGCA GCTGCGGGAC AGACCATCCC GCCGGGAACA Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
| Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ss358876339 | MGP_WTSI_3_93249525 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | T | T | T |
| SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
| rs262645749 | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | T | T | T | ||||
| Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
|---|---|---|---|---|---|---|
| ss358876339 | MGP_WTSI_3_93249525 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | C/T |
| Location: Chr3:93352910 () rs orientation: forward | ||||||||
| Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
|---|---|---|---|---|---|---|---|---|
| Cpgi13475 | CpG island 13475 | within coordinates | ||||||
| Gm37245 | predicted gene, 37245 | within coordinates | ||||||
| Gm56800 | predicted gene, 56800 | 809 bp upstream | ||||||
| Gm66249 | predicted gene, 66249 | within coordinates | ||||||
| Tchh | trichohyalin | within coordinates | ||||||
| Tssr961 | transcription start site region 961 | 1597 bp downstream | ||||||
| Tssr962 | transcription start site region 962 | 477 bp downstream | ||||||
| Tssr963 | transcription start site region 963 | 441 bp downstream | ||||||
| Tssr964 | transcription start site region 964 | 342 bp downstream | ||||||
| Tssr30352 | transcription start site region 30352 | 1980 bp downstream | ||||||
| Tssr30353 | transcription start site region 30353 | 1961 bp downstream | ||||||
| Tssr30354 | transcription start site region 30354 | 1946 bp downstream | ||||||
| Tssr30355 | transcription start site region 30355 | 1927 bp downstream | ||||||
| Tssr30356 | transcription start site region 30356 | 1873 bp downstream | ||||||
| Tssr30357 | transcription start site region 30357 | 1818 bp downstream | ||||||
| Tssr30358 | transcription start site region 30358 | 1700 bp downstream | ||||||
| Tssr30359 | transcription start site region 30359 | 1674 bp downstream | ||||||
| Tssr30360 | transcription start site region 30360 | 1644 bp downstream | ||||||
| Tssr30361 | transcription start site region 30361 | 1319 bp downstream | ||||||
| Tssr30362 | transcription start site region 30362 | 1303 bp downstream | ||||||
| Tssr30363 | transcription start site region 30363 | 1161 bp downstream | ||||||
| Tssr30364 | transcription start site region 30364 | 1089 bp downstream | ||||||
| Tssr30365 | transcription start site region 30365 | 1054 bp downstream | ||||||
| Tssr30366 | transcription start site region 30366 | 1001 bp downstream | ||||||
| Tssr30367 | transcription start site region 30367 | 962 bp downstream | ||||||
| Tssr30368 | transcription start site region 30368 | 938 bp downstream | ||||||
| Tssr30369 | transcription start site region 30369 | 934 bp downstream | ||||||
| Tssr30370 | transcription start site region 30370 | 925 bp downstream | ||||||
| Tssr30371 | transcription start site region 30371 | 898 bp downstream | ||||||
| Tssr30372 | transcription start site region 30372 | 888 bp downstream | ||||||
| Tssr30373 | transcription start site region 30373 | 835 bp downstream | ||||||
| Tssr30374 | transcription start site region 30374 | 821 bp downstream | ||||||
| Tssr30375 | transcription start site region 30375 | 808 bp downstream | ||||||
| Tssr30376 | transcription start site region 30376 | 772 bp downstream | ||||||
| Tssr30377 | transcription start site region 30377 | 746 bp downstream | ||||||
| Tssr30378 | transcription start site region 30378 | 724 bp downstream | ||||||
| Tssr30379 | transcription start site region 30379 | 707 bp downstream | ||||||
| Tssr30380 | transcription start site region 30380 | 628 bp downstream | ||||||
| Tssr30381 | transcription start site region 30381 | 611 bp downstream | ||||||
| Tssr30382 | transcription start site region 30382 | 556 bp downstream | ||||||
| Tssr30383 | transcription start site region 30383 | 545 bp downstream | ||||||
| Tssr30384 | transcription start site region 30384 | 536 bp downstream | ||||||
| Tssr30385 | transcription start site region 30385 | 511 bp downstream | ||||||
| Tssr30386 | transcription start site region 30386 | 489 bp downstream | ||||||
| Tssr30387 | transcription start site region 30387 | 395 bp downstream | ||||||
| Tssr30388 | transcription start site region 30388 | 376 bp downstream | ||||||
| Tssr30389 | transcription start site region 30389 | 354 bp downstream | ||||||
| Tssr30390 | transcription start site region 30390 | 283 bp downstream | ||||||
| Tssr30391 | transcription start site region 30391 | 273 bp downstream | ||||||
| Tssr30392 | transcription start site region 30392 | 255 bp downstream | ||||||
| Tssr30393 | transcription start site region 30393 | 244 bp downstream | ||||||
| Tssr30394 | transcription start site region 30394 | 218 bp downstream | ||||||
| Tssr30395 | transcription start site region 30395 | 191 bp downstream | ||||||
| Tssr30396 | transcription start site region 30396 | 141 bp downstream | ||||||
| Tssr30397 | transcription start site region 30397 | 125 bp downstream | ||||||
| Tssr30398 | transcription start site region 30398 | 47 bp downstream | ||||||
| Tssr30399 | transcription start site region 30399 | within coordinates | ||||||
| Tssr30400 | transcription start site region 30400 | 473 bp upstream | ||||||
| Tssr30401 | transcription start site region 30401 | 493 bp upstream | ||||||
| Tssr30402 | transcription start site region 30402 | 592 bp upstream | ||||||
| Tssr30403 | transcription start site region 30403 | 632 bp upstream | ||||||
| Tssr30404 | transcription start site region 30404 | 1770 bp upstream | ||||||
| Tssr30405 | transcription start site region 30405 | 1881 bp upstream | ||||||
| Tssr34352 | transcription start site region 34352 | 1719 bp upstream | ||||||
| Tssr34353 | transcription start site region 34353 | 1713 bp upstream | ||||||
| Tssr34354 | transcription start site region 34354 | 1662 bp upstream | ||||||
| Tssr34355 | transcription start site region 34355 | 1565 bp upstream | ||||||
| Tssr34356 | transcription start site region 34356 | 884 bp upstream | ||||||
| Tssr34357 | transcription start site region 34357 | 819 bp upstream | ||||||
| Tssr34358 | transcription start site region 34358 | 760 bp upstream | ||||||
| Tssr34359 | transcription start site region 34359 | 685 bp upstream | ||||||
| Tssr34360 | transcription start site region 34360 | 640 bp upstream | ||||||
| Tssr34361 | transcription start site region 34361 | 583 bp upstream | ||||||
| Tssr34362 | transcription start site region 34362 | 570 bp upstream | ||||||
| Tssr34363 | transcription start site region 34363 | 545 bp upstream | ||||||
| Tssr34364 | transcription start site region 34364 | 530 bp upstream | ||||||
| Tssr34365 | transcription start site region 34365 | 504 bp upstream | ||||||
| Tssr34366 | transcription start site region 34366 | 436 bp upstream | ||||||
| Tssr34367 | transcription start site region 34367 | 271 bp upstream | ||||||
| Tssr34368 | transcription start site region 34368 | 241 bp upstream | ||||||
| Tssr34369 | transcription start site region 34369 | 215 bp upstream | ||||||
| Tssr34370 | transcription start site region 34370 | 189 bp upstream | ||||||
| Tssr34371 | transcription start site region 34371 | 46 bp upstream | ||||||
| Tssr34372 | transcription start site region 34372 | 605 bp downstream | ||||||
| Tssr34373 | transcription start site region 34373 | 1773 bp downstream | ||||||
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/10/2024 MGI 6.24 |
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