rs262646012 SNP Detail

Summary

• ID
  rs262646012
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:135147647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTTTAGCTG TATCTCTTGT TGTCTGTATC TTACTGTTGA
  TTATATTTGA ACCAATCTAT AAGTCTCTGG CTTTAAGCTT TACTGATTTG TAAAAAAAAA
  R
  GAAAAAAAAG AATAACAAAA TGAGCTTCTG ATGGGATACA AAATGAGAAA AGGTTACAAA
  ATAATATGGG AATATCATAT TTTGAAAGAC AGGAGTACC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325979743	CHEV_X_132781437	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262646012					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:135147647 () rs orientation: forward

Symbol	Name	Function Class
Gm39535	predicted gene, 39535	1881 bp upstream
Rr693756	regulatory region 693756	1884 bp distal
Rr693757	regulatory region 693757	1809 bp distal
Rr693758	regulatory region 693758	1205 bp distal
Tceal9	transcription elongation factor A like 9	within coordinates
Tssr162036	transcription start site region 162036	1796 bp downstream
Tssr162037	transcription start site region 162037	1723 bp downstream