rs262655441 SNP Detail

Summary

• ID
  rs262655441
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135396397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTATCCTA GAGTTTCCCC
  GTAATCAAAA GTCTGAAAGG TGCTATTAGT AGGTAATTTC TCTCTCAAAT GCCAGCCCTG
  GAGAATCGGT GTGAGGCCCT CCTTATTATT TTGAAAATCA AAGTTGAGAT TTGGCAGCTG
  AATGCATGAT ATGTGTGTGT ATGGGGAGGG GGGGGTGTCT ATCTCAGATT GGTAAGTGGG
  Y
  CCCAGGTTCT CCCGAGGGAC TGATTCTTAG GAGCTGGGAA GGGCTTTGCC AGCCAGGAGG
  ACTGACAGGC ACTTCTGCTT TCATTTCACT GACCGCCCTT TGGTGAAATC TGGCTGTGCA
  CTGCACCAAG CACCTTTCTA TCTGTCCTAG GCCGGTGGCG GACCTCAGCC TGGCCGCCAC
  CACCCCACCC CAACCCCGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359841217	MGP_WTSI_3_135353600	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262655441					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359841217	MGP_WTSI_3_135353600	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135396397 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13858	CpG island 13858	18 bp proximal
Nfkb1	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	Intron
Rr398044	regulatory region 398044	198 bp downstream
Rr585766	regulatory region 585766	1810 bp distal
Rr585767	regulatory region 585767	900 bp proximal
Tssr31841	transcription start site region 31841	1505 bp downstream
Tssr31842	transcription start site region 31842	1486 bp downstream
Tssr31843	transcription start site region 31843	1468 bp downstream
Tssr31844	transcription start site region 31844	1433 bp downstream
Tssr31845	transcription start site region 31845	1393 bp downstream
Tssr35823	transcription start site region 35823	1368 bp upstream
Tssr35824	transcription start site region 35824	854 bp upstream
Tssr35825	transcription start site region 35825	503 bp downstream
Tssr35826	transcription start site region 35826	629 bp downstream
Tssr35827	transcription start site region 35827	638 bp downstream
Tssr35828	transcription start site region 35828	689 bp downstream
Tssr35829	transcription start site region 35829	749 bp downstream
Tssr35830	transcription start site region 35830	775 bp downstream
Tssr35831	transcription start site region 35831	784 bp downstream
Tssr35832	transcription start site region 35832	852 bp downstream
Tssr35833	transcription start site region 35833	876 bp downstream
Tssr35834	transcription start site region 35834	1303 bp downstream