rs262657115 SNP Detail

Summary

• ID
  rs262657115
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85393230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGTGAGGC AGGAGGATTG
  CAGAGTTCCA AAGCTATTGT GGTCTACATA GCAAGTTCCA TGCCATTCAG GACTACATGG
  TGAAACCCTA TCCCAAACAA AATTCATGGT GAGGTGGCTA ATGCTTGTAA TTCAGGAACC
  TGAGGCTGAT GCAGGAGGCC CAGATGAGTT TTACATTTAC TTGTTTATAT AGTTTGTGTG
  T
  GGGGGGGGTG GGGGGTGGGA GTGGGGGTGG TCAAGGGACA TCTTAGGAGA ACTGATTTTC
  TCCTTACACA ATGGATCCCA GAGATTCACC TCAGGTTGTT AGGCTTGGTG TCGGTGTCCT
  TACCTTGGAG CCATCTTCAT AGCTCGGTGG CACACACCTT TCTCTGAGTT TGAGGCCAGT
  CTGGTCTACA GATGAACTTC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CZECHII/EiJ	JF1/MsJ	NZO/HlLtJ	PWK/PhJ	SPRET/EiJ
ss375404009	MGP_WTSI_8_87190500	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CZECHII/EiJ	JF1/MsJ	NZO/HlLtJ	PWK/PhJ	SPRET/EiJ
rs262657115					SNP	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375404009	MGP_WTSI_8_87190500	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85393230 () rs orientation: forward

Symbol	Name	Function Class
4930447I22Rik	RIKEN cDNA 4930447I22 gene	1575 bp upstream
Cpgi20704	CpG island 20704	1030 bp distal
Gm26664	predicted gene, 26664	within coordinates
Gm50464	predicted gene, 50464	within coordinates
Rr368566	regulatory region 368566	1443 bp downstream
Rr666567	regulatory region 666567	1457 bp distal
Rr666568	regulatory region 666568	582 bp distal
Rr666569	regulatory region 666569	1529 bp proximal
Tssr2627	transcription start site region 2627	1463 bp downstream