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rs262657616 SNP Detail
Summary
  • ID
    rs262657616
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr5:91052081 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGGTGGGATT CGGATTCGAG
GCTGATGTTT CTGGGGAAGC CTCAGGTGGG CGCAGCCATC CCCAGCCCTT CTGACCCAGT
GTCTTCTCCT ACAGGGGCTG TTGTGGCCAG TGAACTGCGC TGTCAATGCC TGAAGACCCT
GCCAAGGGTT GACTTCAAGA ACATCCAGAG CTTGAGTGTG ACGCCCCCAG GACCCCACTG
Y
GCCCAGACAG AAGTCATGTG AGTGTCTCCC TGGATAGCCT CTGCCATGGC CAGAGTTGCC
CAGACCCTCC TGCCGCCCCA TGCTCACCCT AAAGAAACCT CGTGCCTTAT AATGATCCCC
ACATCTCTCT GCAGAGCCAC TCTCAAGGGC GGTCAAAAAG TTTGCCTTGA CCCTGAAGCC
CCCCTGGTTC AGAAAATCAT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss365847492 MGP_WTSI_5_91333248 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs262657616 SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss365847492 MGP_WTSI_5_91333248 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr5:91052081 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cxcl2 C-X-C motif chemokine ligand 2 within coordinates
Gm73232 predicted gene, 73232 1018 bp upstream
Tssr47224 transcription start site region 47224 513 bp downstream
Tssr47225 transcription start site region 47225 411 bp downstream
Tssr47226 transcription start site region 47226 342 bp downstream
Tssr47227 transcription start site region 47227 148 bp downstream
Tssr47228 transcription start site region 47228 85 bp downstream
Tssr47229 transcription start site region 47229 64 bp downstream
Tssr47230 transcription start site region 47230 39 bp downstream
Tssr47231 transcription start site region 47231 9 bp downstream
Tssr47232 transcription start site region 47232 127 bp upstream
Tssr47233 transcription start site region 47233 144 bp upstream
Tssr47234 transcription start site region 47234 216 bp upstream
Tssr47235 transcription start site region 47235 966 bp upstream
Tssr47236 transcription start site region 47236 986 bp upstream
Tssr47237 transcription start site region 47237 1035 bp upstream
Tssr47238 transcription start site region 47238 1041 bp upstream
Tssr47239 transcription start site region 47239 1101 bp upstream
Tssr47240 transcription start site region 47240 1113 bp upstream
Tssr47241 transcription start site region 47241 1128 bp upstream
Tssr47242 transcription start site region 47242 1165 bp upstream
Tssr47243 transcription start site region 47243 1188 bp upstream
Tssr47244 transcription start site region 47244 1222 bp upstream
Tssr47245 transcription start site region 47245 1242 bp upstream
Tssr47246 transcription start site region 47246 1293 bp upstream
Tssr47247 transcription start site region 47247 1337 bp upstream
Tssr47248 transcription start site region 47248 1400 bp upstream
Tssr47249 transcription start site region 47249 1470 bp upstream
Tssr47250 transcription start site region 47250 1608 bp upstream
Tssr47251 transcription start site region 47251 1672 bp upstream
Tssr47252 transcription start site region 47252 1724 bp upstream
Tssr51810 transcription start site region 51810 1079 bp upstream
Tssr51811 transcription start site region 51811 1025 bp upstream
Tssr51812 transcription start site region 51812 within coordinates
Tssr51813 transcription start site region 51813 11 bp downstream
Tssr51814 transcription start site region 51814 985 bp downstream
Tssr51815 transcription start site region 51815 1019 bp downstream
Tssr51816 transcription start site region 51816 1053 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory