rs262659641 SNP Detail

Summary

• ID
  rs262659641
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107148126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGACACTC AGTCTGTGAA
  TGAGAATTAA GCCTTTGCTA ACAATGACAA GGTACCTAAT ACAAGCAGTA AATGCCCCTG
  GACCATTTAC CAGGAGGAGG AACTGAAGAT AAGAACGCAC TCAGGCTCCA CCCTGGCAGC
  TCCTGCAGAG AAGTGGACTC GGGCCATGCT GGTGATCTTC TGTAGTATGG TGTGAGCATG
  R
  GAGGGGCCTT ATCCGCAAGC AGACACACAC AGTGGGCTCA TGAGAAGGTG ACACTGTGCA
  TAGCCCTTCT TGCTGGAGGG AAGCCCTCCA GCCTTCTCTA CTACATACCT GATGGATCCT
  GTATTGGGCC ATCCATCTTC TCTCTACAAT AATAAAAACT AGTGTTTTCC AAGGAATGTT
  TTCTAGTATG CTAATTCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320864893	CHEV_3_107043728	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262659641					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107148126 () rs orientation: forward

Symbol	Name	Function Class
Gm66085	predicted gene, 66085	1056 bp upstream
Prok1	prokineticin 1	1103 bp upstream
Rr582947	regulatory region 582947	714 bp proximal
Rr582948	regulatory region 582948	1067 bp proximal
Tssr31192	transcription start site region 31192	979 bp upstream
Tssr31193	transcription start site region 31193	1050 bp upstream
Tssr31194	transcription start site region 31194	1105 bp upstream