rs262664953 SNP Detail

Summary

• ID
  rs262664953
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:16137888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGACATTAA GATATGGCTC
  AAGGCCAACA AAGTTTATAA TAAAATCTGA CTTACCTTCT CAAGGACTGT ATTACATTCT
  TTTACTCTAT ACATCCTTTC TTCTAAAAAT TATATACATA CATATAAATA TATACATATA
  TAATATACAA TGGTAGGGAG TCTGAAGCAT TAATGAAATA ATTGGCATAA TATATTATAA
  Y
  GATATTTTAA TATAGTCAAC CCATTAGGAT ACCAGCACAT TATGTAGACA ACAATGAGCA
  TTTAATTCTC TTGTTCTAAT TCTATTGCAA GAGAAGATCT GCCTCTGATT CATTAAAAAT
  TGTAAAGGAC GGTGGATTTG ACTATATGGG TGTCTAATTT TGGGAAGAAA ATGTATCTGC
  AGTTGTAAAC TACCCTTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364074976	MGP_WTSI_5_15438708	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262664953					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364074976	MGP_WTSI_5_15438708	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:16137888 () rs orientation: forward

Symbol	Name	Function Class
Cacna2d1	calcium channel, voltage-dependent, alpha2/delta subunit 1	1898 bp upstream
Cpgi15553	CpG island 15553	1091 bp proximal
Gm3510	predicted gene 3510	within coordinates
Rr607525	regulatory region 607525	200 bp proximal
Rr607526	regulatory region 607526	1240 bp proximal
Tssr1426	transcription start site region 1426	1784 bp upstream
Tssr45209	transcription start site region 45209	1483 bp upstream
Tssr45210	transcription start site region 45210	1666 bp upstream
Tssr45211	transcription start site region 45211	1795 bp upstream
Tssr45212	transcription start site region 45212	1816 bp upstream
Tssr45213	transcription start site region 45213	1841 bp upstream
Tssr45214	transcription start site region 45214	1872 bp upstream