rs262676393 SNP Detail

Summary

• ID
  rs262676393
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115220475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGACCCCGCG CCGCCAGCTC
  GGTGCAGAGC GCGGGGAGGG CAGAGGGGCG TGCACAGTAC CGGGGTGGGA GGGAGGGCCC
  ACTCTCCTGT CTCTTTATTA ATATGGCGGG CTTAGGCCTG CAGAGCCAAC GTGCCGGAGC
  TCCGGGCGCA GACAGTCGCC TTCACCAACA TGGCGGCCAC ACCCGCTCCC CGCCCTCCCC
  Y
  ACCTCCCGGG GTCCCAAAGA GACTAGGTCC AGCGTCTCAG ACGGGGGCCC CCTAGCAATG
  AATGAGAAGA TGGCAGATGT CTTCCCCACC GACTAATGAC TCTGAAACTC AGGTCTGCGG
  CTGAAAGAGC ATGTCCGCAA CCCAGACACT AACCCCTTCC TTCCCCGCCT GCCACCTCGG
  ACGGGATGCT AGGGGACAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323484724	CHEV_10_114821626	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262676393					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115220475 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2206	CpG island 2206	within coordinates
Rr402239	regulatory region 402239	158 bp upstream
Rr439213	regulatory region 439213	171 bp distal
Rr439214	regulatory region 439214	256 bp distal
Rr439215	regulatory region 439215	within coordinates
Rr439216	regulatory region 439216	389 bp proximal
Rr439217	regulatory region 439217	652 bp proximal
Thap2	THAP domain containing, apoptosis associated protein 2	135 bp upstream
Tssr95813	transcription start site region 95813	620 bp downstream
Tssr95814	transcription start site region 95814	351 bp upstream
Tssr95815	transcription start site region 95815	381 bp upstream
Tssr95816	transcription start site region 95816	475 bp upstream
Tssr99330	transcription start site region 99330	234 bp upstream
Tssr99331	transcription start site region 99331	195 bp upstream
Tssr99332	transcription start site region 99332	135 bp upstream
Tssr99333	transcription start site region 99333	61 bp upstream
Tssr99334	transcription start site region 99334	8 bp upstream
Tssr99335	transcription start site region 99335	181 bp downstream
Zfc3h1	zinc finger, C3H1-type containing	389 bp upstream