rs262680386 SNP Detail

Summary

• ID
  rs262680386
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9676018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGAGTAAA CCAGACATTC
  TGCATCCAGA TCATGCCCCT AAATTCTATA GGTTTTGGCT AGGGCTAGGA GGGCCTTATT
  CATCAACAAT TGAGTAAAAG GGTGTCCACA TGGCCCATTG TTCTTGGAGA TTGAACATCA
  CGTGGCTTGC TAGACATGTG ATGGGGCTCA TTAAATGTTT ATTTGGGGTA CCTTCCAACC
  R
  CTAAAGAGGG ATGAGGACAA GGATTCTAAA ATGAACTTTG TCCTCCCAGA AACTGATCAC
  CCGTCCAGAA AATGCCTGTT TTAAGTAATC ACATCCAAAA ATAGTGGTGT GTTTTAAAGC
  CACCTTGTTC TCACTTCCTG TGAGGCACTG GCCCACAGGT CCTGTCCGTC CTTTCTGAAA
  TGCCTTTCCG TCAGCCCTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320651692	CHEV_3_9610958	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262680386					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9676018 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12974	CpG island 12974	442 bp distal
Gm56803	predicted gene, 56803	1975 bp downstream
Rr69501	regulatory region 69501	218 bp distal
Rr73453	regulatory region 73453	583 bp proximal
Rr78141	regulatory region 78141	417 bp distal
Tssr32578	transcription start site region 32578	918 bp upstream
Tssr32579	transcription start site region 32579	872 bp upstream
Tssr32580	transcription start site region 32580	834 bp upstream
Tssr32581	transcription start site region 32581	711 bp upstream
Zfp704	zinc finger protein 704	873 bp upstream