rs262690980 SNP Detail

Summary

• ID
  rs262690980
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:92878475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCCAGAAA TGTGGGTGAG
  AGGGTGCTCC CTGGAATTCC CTGAGGACCT CAGGATGGGA GCTAAAGTCA GTAGGTGCAT
  GGCATCCACG CACACACATC CCATGCTTTG CCACTAACCC GTTTCCCTTC CAGTCTTCCA
  AAGCAAGTAT GGCTTTTTTA CCAAGAGGCA ACATGCTCAG AGATGTTCAA CATGCCACAA
  R
  TCACACAGCT AGTTGGGGGC ACGGGGAGAC CCAAGCCAGC CTGCCTCCCT CCATCAGACA
  ATGTCTTCTC TGCCACTTCC AGTTAGCTGC CCTTTCCCAC AAAGCAACTA TGGATTTCTG
  CTGCTTTCTT CCACAAATAC TGCACACACA GAGTTTACCA GTGTGTTGTG AGAGGAAGCC
  AGGTTCCTCT CTTGCCTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354845190	MGP_WTSI_2_92888287	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	G	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262690980					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	G	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354845190	MGP_WTSI_2_92888287	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:92878475 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11940	CpG island 11940	1407 bp distal
Gm75552	predicted gene, 75552	within coordinates
Prdm11	PR domain containing 11	1963 bp upstream
Rr729	regulatory region 729	1536 bp distal
Rr45256	regulatory region 45256	526 bp proximal
Rr50816	regulatory region 50816	526 bp proximal
Rr57212	regulatory region 57212	1074 bp distal
Rr367235	regulatory region 367235	969 bp upstream
Tssr25276	transcription start site region 25276	1958 bp upstream
Tssr25277	transcription start site region 25277	1832 bp upstream
Tssr25278	transcription start site region 25278	1665 bp upstream