rs262691554 SNP Detail

Summary

• ID
  rs262691554
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:8616885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAACTTTGA ACAAACCAAC
  TCAGTTTTAA ATTCACTTTT CATTTAAGAT TTTCCTCAGA ATGCTATCAA AGTAATTTTG
  CACCTTAAAA CAAAATCTGA GCTTGTACTC TATCACTTCA GAGTTCTGCT GTCTCCAGTT
  AACACCCAAA TTCCTTAATC ACAAAACATT CCTAGGTTTT ATTCTTTTTT TTTTCAGTTG
  Y
  TCCTCAAGAC ACTTTTCACT TCAGCACAAA GTTCACATGA AACTCTTTAA TACTTTGAAG
  GCAGTTATGT ACTCCAAGAA TTTGTACTTC AGTTCCCCAC CCTTCCTCCA CCCTTCCTCC
  ATCCTTGGAT ATTCACAGAT TACTGCTTCA AAGTTGCCTG CCTTAGCTCC TCCCCTTGAG
  CTGGGGTAAA CATGCTGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321463541	CHEV_5_8566885	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262691554					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:8616885 () rs orientation: forward

Symbol	Name	Function Class
Gm72884	predicted gene, 72884	168 bp upstream
Rr130297	regulatory region 130297	516 bp proximal
Rundc3b	RUN domain containing 3B	within coordinates
Tssr45118	transcription start site region 45118	208 bp upstream
Tssr45119	transcription start site region 45119	228 bp upstream