rs262702753 SNP Detail

Summary

• ID
  rs262702753
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:87840685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCCTAAAG GATTATTTTA
  TTGAAATGAC TGGAAAGGAA ATAGGTTCTC AAAGAAAAAA AATAGAAAAT CCAATTTTTC
  ACAAACTATT TTGTATACAT TATTGACTTG CATTTTCAAC TCCATATTGA ACACTTATAA
  AATTCCTGTA ATATAACTGA GAAGCATATA GAGTCCATGG GTCGAATTCA AATGAATGCC
  R
  TATAATACAT AGAATAAATA AAAGAATACA TTTTCTTTTC TTCCATGTAG ATTAATTCAG
  AAATATATCA TTTTTGTAGC ATGATCCAAA GGTGAAAAGA TTTGTACATT TCCAGTTTCA
  GTCAGTTCTG TGAAAGAAAG ATGTATAATC ATTTCTGTTG TGTTAAATCA GTGATTCCCA
  ACATTCCCTT TAATACTGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365777250	MGP_WTSI_5_88121851	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262702753					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365777250	MGP_WTSI_5_88121851	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:87840685 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Csn2	casein beta			mRNA-UTR
				Noncoding-Transcript-Variant
D5Mit12	DNA segment, Chr 5, Massachusetts Institute of Technology 12			1036 bp proximal
D5Mit16	DNA segment, Chr 5, Massachusetts Institute of Technology 16			1042 bp proximal
D5Mit16.1	DNA segment, Chr 5, Massachusetts Institute of Technology 16.1			1142 bp proximal
D5Mit16.2	DNA segment, Chr 5, Massachusetts Institute of Technology 16.2			840 bp proximal
Tssr1529	transcription start site region 1529			1728 bp upstream
Tssr46883	transcription start site region 46883			1675 bp upstream
Tssr46884	transcription start site region 46884			1688 bp upstream
Tssr46885	transcription start site region 46885			1716 bp upstream
Tssr46886	transcription start site region 46886			1744 bp upstream
Tssr46887	transcription start site region 46887			1761 bp upstream
Tssr46888	transcription start site region 46888			1830 bp upstream
Tssr46889	transcription start site region 46889			1879 bp upstream
Tssr46890	transcription start site region 46890			1894 bp upstream
Tssr46891	transcription start site region 46891			1938 bp upstream
Tssr46892	transcription start site region 46892			1942 bp upstream
Tssr46893	transcription start site region 46893			1970 bp upstream
Tssr51613	transcription start site region 51613			147 bp upstream
Tssr51614	transcription start site region 51614			84 bp upstream
Tssr51615	transcription start site region 51615			28 bp upstream
Tssr51616	transcription start site region 51616			within coordinates
Tssr51617	transcription start site region 51617			7 bp downstream
Tssr51618	transcription start site region 51618			1704 bp downstream
Tssr51619	transcription start site region 51619			1742 bp downstream
Tssr51620	transcription start site region 51620			1751 bp downstream
Tssr51621	transcription start site region 51621			1760 bp downstream
Tssr51622	transcription start site region 51622			1798 bp downstream
Tssr51623	transcription start site region 51623			1823 bp downstream
Tssr51624	transcription start site region 51624			1841 bp downstream
Tssr51625	transcription start site region 51625			1847 bp downstream
Tssr51626	transcription start site region 51626			1857 bp downstream
Tssr51627	transcription start site region 51627			1872 bp downstream
Tssr51628	transcription start site region 51628			1913 bp downstream