rs262709199 SNP Detail

Summary

• ID
  rs262709199
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112642492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTCACAA CCACCCGTAA
  TGAGATCTGA CGCCCCCTTC TGGTGCGTCT GAAGACAGCT ACAGTACTTA TGTATAATAA
  TAAATAAATC TTCAAAAAAA AAAAAACCAA AAACCAAAAA CAAACAAACC AACCTGTGGT
  TCCTGACCCT CTTCCCCCCT CACAGAGGTC TTCCCCCCTC TCTCACAGAG GTCTTCCTCC
  Y
  TCTCATCCCT GGCAGCTTGG TAGGATGCAG GCACTATCCT GAGCTAAGAG GTCTGGGCAT
  CAGCTACATA GTGAGATATG CTCTTGAGAC AGCTCCCAAG TTAGATGGCA CCCGAAATCT
  AGAGAGGTTC TGCCTGTAGC AGCCGGACTG TGGCTCTGTG ATAGCCTCTG TCATCTATAT
  GCCAGTAGAG AGGCATCTCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387390222	MGP_WTSI_12_113914269	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262709199					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387390222	MGP_WTSI_12_113914269	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112642492 () rs orientation: forward

Symbol	Name	Function Class
Akt1	thymoma viral proto-oncogene 1	1226 bp upstream
Cpgi5173	CpG island 5173	1149 bp distal
Gm30150	predicted gene, 30150	88 bp downstream
Rr369631	regulatory region 369631	519 bp downstream
Rr473553	regulatory region 473553	1793 bp distal
Rr473554	regulatory region 473554	1637 bp distal
Rr473555	regulatory region 473555	1658 bp distal
Rr473556	regulatory region 473556	111 bp distal
Rr473557	regulatory region 473557	1055 bp distal
Rr473558	regulatory region 473558	590 bp distal
Rr473559	regulatory region 473559	399 bp distal
Rr473560	regulatory region 473560	153 bp distal
Tssr115391	transcription start site region 115391	1635 bp downstream
Tssr117878	transcription start site region 117878	1972 bp upstream
Tssr117879	transcription start site region 117879	1783 bp upstream
Tssr117880	transcription start site region 117880	1691 bp upstream
Tssr117881	transcription start site region 117881	1673 bp upstream
Tssr117882	transcription start site region 117882	1294 bp upstream
Tssr117883	transcription start site region 117883	1244 bp upstream
Tssr117884	transcription start site region 117884	1221 bp upstream