rs262712023 SNP Detail

Summary

• ID
  rs262712023
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126049041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCTCAGA CACTGCACCG
  GGTGACAGTG ATTCCCACAG AGCACGGTTA ATGCAGACTG TGGCTGCAGG TGCGGCTGGG
  ACGGAGCACA CCTGCCTGCC CTGGGTTCCA GCCCCAGCAC CACACTGGGC AGCACTGGAC
  TAAACGACCC TGTCTTCTTT TCTTGGCTTT TGTTTTCGTT TCTGAAACGG AGCCTTGCTT
  K
  CGAGGCTGGC CTATCTCAGT CTACTGAGGG CCGAGCTACT GAGTCTGACT GGGCTAGGTG
  TTTCATGAAA CCGTCACACC TTCATGCCTT GTGATTTGGG GATCCACAGG ACACAGCCGT
  TCATCTGACA CACTGTACTA GGGAATGAGA ATCATGGCAG CAGGCAAGAG GGAGCCACTG
  GGGAAAACTG TCTCAACACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373068801	MGP_WTSI_7_133593383	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262712023					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373068801	MGP_WTSI_7_133593383	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126049041 () rs orientation: forward

Symbol	Name	Function Class
Atp2a1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	within coordinates
Tssr69023	transcription start site region 69023	1955 bp downstream
Tssr74676	transcription start site region 74676	1967 bp upstream
Tssr74677	transcription start site region 74677	1924 bp upstream
Tssr74678	transcription start site region 74678	1903 bp upstream
Tssr74679	transcription start site region 74679	1883 bp upstream
Tssr74680	transcription start site region 74680	1865 bp upstream
Tssr74681	transcription start site region 74681	1839 bp upstream
Tssr74682	transcription start site region 74682	1828 bp upstream
Tssr74683	transcription start site region 74683	1625 bp upstream
Tssr74684	transcription start site region 74684	1523 bp upstream
Tssr74685	transcription start site region 74685	1487 bp upstream
Tssr74686	transcription start site region 74686	1231 bp upstream
Tssr74687	transcription start site region 74687	1195 bp upstream
Tssr74688	transcription start site region 74688	1110 bp upstream
Tssr74689	transcription start site region 74689	1039 bp upstream
Tssr74690	transcription start site region 74690	623 bp upstream
Tssr74691	transcription start site region 74691	563 bp upstream
Tssr74692	transcription start site region 74692	283 bp downstream
Tssr74693	transcription start site region 74693	309 bp downstream
Tssr74694	transcription start site region 74694	432 bp downstream
Tssr74695	transcription start site region 74695	633 bp downstream