rs262716241 SNP Detail

Summary

• ID
  rs262716241
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70416050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCCTCCGGG AGCCACAAGC CTCTGGTGAG GCAAATCTTT
  GAGAAGAGGC TCCGCCCTTT TCCCCCCTTC CTAGACCCGC CTCTTTTTTT TTTTTTTTTT
  K
  GTAATTTGAC ACACTGCCGT AAAGTGCCCA CTGACTCTAA CGACGAGTTC CTACCTCTGT
  CTTTTCCCTT CTGCCGTCAA GCAGCTTCGC TCCCAGAAG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323735953	CHEV_11_70338726	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262716241					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70416050 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3188	CpG island 3188	29 bp proximal
Psmb6	proteasome (prosome, macropain) subunit, beta type 6	143 bp upstream
Rr369269	regulatory region 369269	within coordinates
Rr450320	regulatory region 450320	1673 bp distal
Rr450321	regulatory region 450321	1634 bp distal
Rr450322	regulatory region 450322	within coordinates
Tssr102728	transcription start site region 102728	137 bp upstream
Tssr102729	transcription start site region 102729	685 bp upstream
Tssr102730	transcription start site region 102730	730 bp upstream
Tssr102731	transcription start site region 102731	757 bp upstream