About   Help   FAQ
rs262718248 SNP Detail
Summary
  • ID
    rs262718248
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr5:117256998 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AAAAAAAAAG GCCAGCGTGT
    TGGGACCCAC CTTTCATTGC AGCCAGAGGC AGGGGAAGGC AGATCCCTAT GAGCCCAAGG
    CCAACCTGTC CACACTGAGA GTTCTAGGCC AGTAAGCCAT CCTAGGTGAG ACCCAATCTC
    AGATAAATAG AAACTAAATA TTTTTTTGTA GTAGAGCGTT GACCAGGAGT TGAGTGTCCA
    M
    GTCTGATAAG GCTTAGGGTG AAAATGTGTC CCTGCAGAAA AACTGCTTTG AGCTTCCACC
    ATCAACTGAA AACAACACAG CTATTTCCAC ACAAAAAACA TGAGACAGGT CCTGGTGCAC
    TTTAACCTCT GGCAGGCACT ATGTTTCCGC GTGGCTTAGG ATGGAGCCAG GCAGGTTATT
    GCAGGTTGCA CTTGGGGGGT                                            
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss366399304 MGP_WTSI_5_117568942 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs262718248 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss366399304 MGP_WTSI_5_117568942 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr5:117256998 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
9530046B11Rik RIKEN cDNA 9530046B11 gene 210 bp downstream
Cpgi16405 CpG island 16405 790 bp proximal
Gm57263 predicted gene, 57263 within coordinates
Rr399292 regulatory region 399292 908 bp upstream
Rr618570 regulatory region 618570 877 bp distal
Rr618571 regulatory region 618571 within coordinates
Rr618572 regulatory region 618572 495 bp proximal
Rr618573 regulatory region 618573 1100 bp proximal
Rr618574 regulatory region 618574 1207 bp proximal
Taok3 TAO kinase 3 1196 bp upstream
Tssr48350 transcription start site region 48350 1187 bp upstream
Tssr48351 transcription start site region 48351 1252 bp upstream
Tssr52880 transcription start site region 52880 943 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
03/25/2025
MGI 6.24
The Jackson Laboratory