rs262734205 SNP Detail

Summary

• ID
  rs262734205
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69692618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTCGGAT CAGGCTACTG
  GCCAACGCCG CCATCGCGCC CCGGGAGGAG ACACCCCCAA ACCAGCAGGC TCCCGGAGCG
  CCCTGGGCTC CCCAAGAGGA GCCCTCTCAC CAGGGCATGC TCAGGACCCA ACCCACCGCC
  CCACCCACAG GATCTGAAGA GAAACCCCAG ACCCCAGTAC GTTCCCCAAC ACCACCGGCT
  Y
  CCACCCTTGG GCCCTGACTA GCTCCAGCGG CTCCAGCAGC CTATGCACTC CTCAGCTGAC
  CTCACCCATG AATTCTGTCC CCTAATGAAA GCTTTCCCCT TCCCTCCTCT CTGGCCTCTG
  TACCAGATAG AAGATACCTC CTCTATCCCA CAGTCAAGAC CCTCCTATAT TTCTAAGATG
  TGTTCTCAAT ACCCCGAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383790605	MGP_WTSI_11_69615294	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262734205					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383790605	MGP_WTSI_11_69615294	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69692618 () rs orientation: forward

Symbol	Name	Function Class
6720407P12Rik	RIKEN cDNA 6720407P12 gene	334 bp downstream
Cpgi3148	CpG island 3148	within coordinates
Cpgi3149	CpG island 3149	806 bp proximal
Cpgi3150	CpG island 3150	1742 bp proximal
Fgf11	fibroblast growth factor 11	within coordinates
G630025P09Rik	RIKEN cDNA G630025P09 gene	1877 bp upstream
Rr450111	regulatory region 450111	within coordinates
Rr450112	regulatory region 450112	1152 bp proximal
Tmem102	transmembrane protein 102	1811 bp downstream
Tssr102534	transcription start site region 102534	997 bp downstream
Tssr108840	transcription start site region 108840	1826 bp upstream
Tssr108841	transcription start site region 108841	1098 bp downstream