rs262739658 SNP Detail

Summary

• ID
  rs262739658
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72900472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGTGTGA GACAGTTACT
  TTCTGCGGGT TGGAAGGCTG AAATGGGGTG ACCTGGGCTA TGCACTTGAT GCACCCTTGG
  GTGCTGGCAG TTACCTGGCT TGGTGGATTC ACTTCAACAC ACGTTTGGAA TCATGAGAAG
  ATCCAAATCG GTGCCCCACA AAAGAGCCAC ACTTGTAGCT CACGAGAAAG GCTGCCTGGA
  Y
  GCAGGCCAAG CTGGCGTTCT GGGTTGTATT TGTGAAATAT GGATTTTTCC CAGAATGAGG
  AAGATCTTCA GTGTCCTAAA AAAAACTACT TTAAAGAGGT AATGCAAAAC TTCGAAAGAA
  AGGGAAAGGG AAAAAAAGGT AAAGAAAATA GATTTATATG CCTATAAAGT CTACATGGAG
  TCTTGTGGGT GAGTACAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350087451	MGP_WTSI_1_72907887	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262739658					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350087451	MGP_WTSI_1_72907887	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72900472 () rs orientation: forward

Symbol	Name	Function Class
Cpgi362	CpG island 362	1052 bp proximal
Igfbp5	insulin-like growth factor binding protein 5	within coordinates
Rr34508	regulatory region 34508	1273 bp distal
Rr34509	regulatory region 34509	529 bp proximal
Tssr7342	transcription start site region 7342	1051 bp upstream
Tssr12189	transcription start site region 12189	1500 bp upstream
Tssr12190	transcription start site region 12190	1004 bp upstream
Tssr12191	transcription start site region 12191	274 bp upstream
Tssr12192	transcription start site region 12192	183 bp downstream
Tssr12193	transcription start site region 12193	348 bp downstream
Tssr12194	transcription start site region 12194	528 bp downstream
Tssr12195	transcription start site region 12195	888 bp downstream
Tssr12196	transcription start site region 12196	982 bp downstream
Tssr12197	transcription start site region 12197	1000 bp downstream
Tssr12198	transcription start site region 12198	1016 bp downstream
Tssr12199	transcription start site region 12199	1901 bp downstream