rs262744409 SNP Detail

Summary

• ID
  rs262744409
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99941771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAGTCACAT GGCCCAGCCC TGGTCAGTTG
  GGTGTTGGTC CATCCAGTGA CATTCTTTTG TGTTACAAGA TCCTGAAGAC TCACAATCAA
  CCTAATGCCC TATCCTgaga gagagagaga gagagagaga gagagagaga gagagaAAtt
  A
  gttggttggt tggttggttg gttggttggt tggttggttg gttggAGAAA GAAGATACAT
  TCAGTTACAG CCATCAGCTC TTGTTTCTTC TGATGAAAGT AAACTCTCTA AATGTTGTAG
  CCTTCCAGGC TTGATCTAAG CCTTGGATGT                                 
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323830620	CHEV_11_99912259	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262744409					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99941771 () rs orientation: forward

Symbol	Name	Function Class
D11Dcr21	DNA Segment, Chr 11, Derry C. Roopenian 21	within coordinates
D11Mit123	DNA segment, Chr 11, Massachusetts Institute of Technology 123	within coordinates
D11Mit123.3	DNA segment, Chr 11, Massachusetts Institute of Technology 123.3	58 bp distal
Gm11571	predicted gene 11571	1341 bp upstream
Krt31	keratin 31	394 bp upstream
Tssr104894	transcription start site region 104894	1159 bp upstream
Tssr104895	transcription start site region 104895	1315 bp upstream
Tssr104896	transcription start site region 104896	1336 bp upstream
Tssr110726	transcription start site region 110726	388 bp upstream