rs262750439 SNP Detail

Summary

• ID
  rs262750439
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122531939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGACAAGCC CGTCCGGCAT
  CACCGTGTTT GGCTTTGGAA GATTCATGAT TCCTATAGTT AGTATATGTG AAGACCCAGA
  GTTACTGTCC AAATGAGCCC CCGCATCTCC GGATGACACT GTCTTCCAGA GGTCTTGAGT
  TCAGTTACTA GCACCCACAG GGCAATTTAC TACCTATAAT CGGATCTGAT GCCCTCTTCT
  R
  GTATGTAGGC ATACAGTTTT CTAAAAATGA TGTGGCATGA AAGTTTTTAG TAGGTGGGGC
  AGATTTATAG AATATTGGCT TTTGAAGGGT TGTTTACCAT TAATGGAGGG AAATTCCCAG
  CATTCTCAAA CTACCCTTTA AGAGCACTGG AGTTTTGTCC CCAGCATCCA CATCCAGCAG
  GTGCCAGCTG CCTATAAGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366516911	MGP_WTSI_5_122843885	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262750439					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366516911	MGP_WTSI_5_122843885	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122531939 () rs orientation: forward

Symbol	Name	Function Class
Arpc3	actin related protein 2/3 complex, subunit 3	within coordinates
Cpgi16551	CpG island 16551	1163 bp distal
Gm32853	predicted gene, 32853	565 bp upstream
Gm57265	predicted gene, 57265	1929 bp downstream
Rr109028	regulatory region 109028	within coordinates
Rr124310	regulatory region 124310	738 bp distal
Rr399327	regulatory region 399327	1870 bp downstream
Rr399328	regulatory region 399328	38 bp upstream
Tssr48682	transcription start site region 48682	1948 bp downstream
Tssr48683	transcription start site region 48683	1918 bp downstream
Tssr48684	transcription start site region 48684	1916 bp downstream
Tssr48685	transcription start site region 48685	1602 bp downstream