rs262754680 SNP Detail

Summary

• ID
  rs262754680
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:51634768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAAAAAAAC AGTAGAAGAA GAATCCAAAT
  CCCAACAGCT GGGACTTCCC ACTCTCTTAT GAATCCTGAT GAGCCCTATA GTTTGATGAA
  AAGAATAATA ATCTCAAAGA TTACTTAGAA ATATACGgga gctggagaga cagctcagta
  S
  ttacgagcac atactgttct ttcagaggac ccaggtccag ttcccatcac cccagttgag
  cagctcacaa acacttgtaa ctccaactca aggggttctg acactgctgg cctcttggcc
  acagcattca catagtcaca cccagtggag                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319717425	CHEV_1_51652453	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262754680					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:51634768 () rs orientation: forward

Symbol	Name	Function Class
Gm17767	predicted gene, 17767	within coordinates
Rr366896	regulatory region 366896	1428 bp downstream
Rr396024	regulatory region 396024	1451 bp upstream
Rr410724	regulatory region 410724	1067 bp distal
Rr410725	regulatory region 410725	1283 bp proximal
Rr410726	regulatory region 410726	1569 bp proximal
Tssr6634	transcription start site region 6634	1611 bp downstream
Tssr6635	transcription start site region 6635	1425 bp downstream
Tssr6636	transcription start site region 6636	1358 bp downstream