rs262759679 SNP Detail

Summary

• ID
  rs262759679
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:28449607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGCCAGTA TCCTCTGTGG
  GGCATCCTAC CTTCTTAGCA ATCTAAGGAA AGGCAGAGGC AGGAGGTTAG AGAAGGCCAG
  CATCGAGGTT TGGAATGACT AAGGGCAAAC AGAAGGTCCA GGGCAGCACG GGATTGGGAA
  AGGTCCCCTC CCTGCCTACT CCTGCCCTGC TGTGCTCACC GTTTTGGCCC AGAAAAGTGG
  K
  TTCTTCTGGA TGGCCCAGGG GCTCAGTGCC ATACCACTCT GACTGATGGC TCTCCGGATG
  AGACCCTTGT TGTATGGGGA GAGGGTCTGC AACACCCAGA AGTTCTGTCA ACAGGCTGCA
  CCTGGGCCCA GGGCTCCCAG CCACACCCTG CTCTGACCAT TATCCTAGGC CCCATTGGCT
  CCCTCCCTTA ACCTTGGGGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353478953	MGP_WTSI_2_28415115	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262759679					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353478953	MGP_WTSI_2_28415115	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28449607 () rs orientation: forward

Symbol	Name	Function Class
Cel	carboxyl ester lipase	within coordinates
Rr553836	regulatory region 553836	1171 bp proximal
Tssr16958	transcription start site region 16958	1968 bp downstream
Tssr16959	transcription start site region 16959	1798 bp downstream
Tssr16960	transcription start site region 16960	1663 bp downstream
Tssr16961	transcription start site region 16961	1578 bp downstream
Tssr16962	transcription start site region 16962	1542 bp downstream
Tssr16963	transcription start site region 16963	959 bp upstream
Tssr16964	transcription start site region 16964	1353 bp upstream
Tssr23253	transcription start site region 23253	1906 bp upstream
Tssr23254	transcription start site region 23254	1819 bp upstream
Tssr23255	transcription start site region 23255	1773 bp upstream
Tssr23256	transcription start site region 23256	1603 bp upstream
Tssr23257	transcription start site region 23257	1573 bp upstream
Tssr23258	transcription start site region 23258	1541 bp upstream
Tssr23259	transcription start site region 23259	1523 bp upstream
Tssr23260	transcription start site region 23260	1513 bp upstream
Tssr23261	transcription start site region 23261	1472 bp upstream
Tssr23262	transcription start site region 23262	200 bp upstream
Tssr23263	transcription start site region 23263	158 bp upstream
Tssr23264	transcription start site region 23264	7 bp downstream
Tssr23265	transcription start site region 23265	78 bp downstream
Tssr23266	transcription start site region 23266	258 bp downstream
Tssr23267	transcription start site region 23267	284 bp downstream
Tssr23268	transcription start site region 23268	926 bp downstream
Tssr23269	transcription start site region 23269	992 bp downstream
Tssr23270	transcription start site region 23270	1063 bp downstream
Tssr23271	transcription start site region 23271	1585 bp downstream
Tssr23272	transcription start site region 23272	1609 bp downstream
Tssr23273	transcription start site region 23273	1639 bp downstream
Tssr23274	transcription start site region 23274	1669 bp downstream
Tssr23275	transcription start site region 23275	1733 bp downstream