rs262761162 SNP Detail

Summary

• ID
  rs262761162
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:61207365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATCTTAGT CTACACAGCA
  AGTACTAGTC CAGCCAGGCA CTTGTGACTC TGTCTTAAAA AAAAAAAAAA GCAGGCGATT
  TCCTTTGACA AAGTGGTTTG TAGTTGTTCT TAAGAGGATT AAGCAAGCAC TTATTTCCCT
  GGGACACAAG GTAGACAGCC CCGAGTGCTA CTGGAGAGGT GGAGATAAGG TACTAGGGGC
  R
  GGGCGTGGGG GTGGGTGGGT GGGTGGGGCA GCTAGGAGAG GGAGCAGCTG GGGGAGGGGA
  TTCCCAGGAG AGTACAAAAT GGTAACAGCA GAGACACGTG GACTTCCGGG TAGGACTGTG
  TGTGTGTGTG TGTGTGTGTG TGTGTGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG
  AATGTGTGAG AGAGAGAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377773582	MGP_WTSI_9_61147890	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262761162					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377773582	MGP_WTSI_9_61147890	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:61207365 () rs orientation: forward

Symbol	Name	Function Class
Rr201094	regulatory region 201094	1965 bp distal
Rr204421	regulatory region 204421	514 bp proximal
Rr209972	regulatory region 209972	within coordinates