rs262771751 SNP Detail

Summary

• ID
  rs262771751
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141265939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTCTCGG GCCTCGCAGC
  TCCGCTCTGC CGCCACCAAA CACCCGAAGC CGACCCTCGC GCTCCGGCGG CGCATGCGCG
  CGGGCGGCGG CGGGCGGGGG AGCGGGAGGA GGGGCGAGCG AGACCCGGGC GGCCGCGACT
  ACGACGGAGC CGGCGCTGTG GCTGCCGGAC GCTTCCCACC GGCGCGCGCG GCCCGCCTCC
  Y
  GCCGCCTGGC CACCGCCCCC TGGCCGCGGG CGCGCGCGCG TCCTCCCGCC CCGACGCGGA
  GGGCCTCCCA GCCGGCGCGC AGGCGCGCGG AGCTCGGAAG GGGGAGGAAT GCGGAGCCGG
  GAAGCGGCGC CCGCGCAGTC AGCTTAGTGC GCAGGCGCGC CGGAGGCCGG GAGGCCGGCC
  GCCGGAGGCG TCGGGGTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss363523221	MGP_WTSI_4_141094543	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs262771751					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363523221	MGP_WTSI_4_141094543	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141265939 () rs orientation: forward

Symbol	Name	Function Class
B830004H01Rik	RIKEN cDNA B830004H01 gene	581 bp upstream
Cpgi15233	CpG island 15233	1421 bp distal
Cpgi15234	CpG island 15234	within coordinates
Gm4123	predicted gene 4123	1211 bp downstream
Gm68462	predicted gene, 68462	462 bp downstream
Rr1207	regulatory region 1207	769 bp distal
Rr603788	regulatory region 603788	1823 bp distal
Rr603789	regulatory region 603789	within coordinates
Spen	spen family transcription repressor	31 bp upstream
Tssr44321	transcription start site region 44321	103 bp upstream
Tssr44322	transcription start site region 44322	2 bp upstream