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rs262776046 SNP Detail
Summary
  • ID
    rs262776046
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr15:76130820 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GATTTAGGAA TCGATATTGA
ATTCATCAAT AGAGAGCTAC ATAAGCTAAA GAGAGTCTTG CCTCCCGAAG TCGTTAGCAC
CCACGCCAGA ACCCAACCAT CTCTGATCAG AAAGCGCAGG GCTTCAGGAC TCTGACTTAG
GACGCCTACA GACAATAGCA GACTGCCTAG GCAAGCTGGA CCAAGCAGTT TCTGTAGGCT
Y
AGAAGCTCCG GGACAGGTGA CAACATTCGC CTTACATCAA GGCCCCGCCC CGCCCCGCCC
CGCCCAAGAC CCCACCCCAC CACAAGGCCC CGCCCCATCA CAAGGCCCCG CCCCATCATA
AGGCCCGCCC AGTCACAAGG CTCTTCTGCG TCTCCCCAGC GGCAGGCGCA GGCCCAAGCA
ATCCGGCCGC CCAGCGGGTG                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss394611505 MGP_WTSI_15_76077050 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs262776046 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss394611505 MGP_WTSI_15_76077050 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr15:76130820 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi7222 CpG island 7222 within coordinates
Grina glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding) 144 bp upstream
Mir6953 microRNA 6953 1571 bp upstream
Rr504688 regulatory region 504688 within coordinates
Rr504689 regulatory region 504689 1074 bp proximal
Tssr4637 transcription start site region 4637 31 bp upstream
Tssr131720 transcription start site region 131720 127 bp upstream
Tssr131721 transcription start site region 131721 196 bp upstream
Tssr131722 transcription start site region 131722 218 bp upstream
Tssr131723 transcription start site region 131723 392 bp upstream
Tssr131724 transcription start site region 131724 751 bp upstream
Tssr131725 transcription start site region 131725 906 bp upstream
Tssr131726 transcription start site region 131726 978 bp upstream
Tssr131727 transcription start site region 131727 1044 bp upstream
Tssr131728 transcription start site region 131728 1064 bp upstream
Tssr131729 transcription start site region 131729 1203 bp upstream
Tssr131730 transcription start site region 131730 1224 bp upstream
Tssr131731 transcription start site region 131731 1287 bp upstream
Tssr131732 transcription start site region 131732 1312 bp upstream
Tssr131733 transcription start site region 131733 1357 bp upstream
Tssr131734 transcription start site region 131734 1374 bp upstream
Tssr131735 transcription start site region 131735 1441 bp upstream
Tssr131736 transcription start site region 131736 1485 bp upstream
Tssr131737 transcription start site region 131737 1658 bp upstream
Tssr131738 transcription start site region 131738 1825 bp upstream
Tssr131739 transcription start site region 131739 1876 bp upstream
Tssr131740 transcription start site region 131740 1895 bp upstream
Tssr131741 transcription start site region 131741 1981 bp upstream
Tssr134959 transcription start site region 134959 within coordinates
Tssr134960 transcription start site region 134960 992 bp downstream
Tssr134961 transcription start site region 134961 1394 bp downstream
Tssr134962 transcription start site region 134962 1524 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory