rs262776849 SNP Detail

Summary

• ID
  rs262776849
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:9812469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGGTGCGGG TCTTCACTTC
  CTGTGGCTGA TAACCAGAGC TCCTTTCAGG GACGCACCGG AGAGTGGAAG CCCCAGGTTG
  GCCACCCACG AGAAGCTTAG TGGGAACCTC CACCCTCACC CCCTACCACC ACCTCGGCGC
  CCGGCTACTG GGAGTTGTGC GACCAGGAGC TGCTGAGCCT GGGGTGGGGG GTGGGGGGCA
  R
  GAAAGGAGGG GGCGCTGGCT GAGTTTGCTA TGAGCCGGGA GGAGAAGAGG GGGAGGGAAG
  GACGCGGGCT CCCGCGGTCC CGGATCCCCG AGGGAGGTGT GATCACTCCC ACGTAGCGAC
  CCTCTTGTGC GTCCTGCCGC CCCCTCCTAT CCATACCTTC CCCCCACCAG CTTCTCACAG
  GGCCCTCCCA GGCTCGGCGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395370676	MGP_WTSI_16_9994698	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262776849					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395370676	MGP_WTSI_16_9994698	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:9812469 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7945	CpG island 7945	within coordinates
Grin2a	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	within coordinates
Tssr139893	transcription start site region 139893	38 bp upstream
Tssr139894	transcription start site region 139894	395 bp downstream
Tssr139895	transcription start site region 139895	439 bp downstream
Tssr139896	transcription start site region 139896	694 bp downstream
Tssr139897	transcription start site region 139897	710 bp downstream
Tssr139898	transcription start site region 139898	743 bp downstream
Tssr139899	transcription start site region 139899	773 bp downstream
Tssr139900	transcription start site region 139900	807 bp downstream
Tssr139901	transcription start site region 139901	903 bp downstream
Tssr139902	transcription start site region 139902	921 bp downstream
Tssr139903	transcription start site region 139903	957 bp downstream
Tssr139904	transcription start site region 139904	1023 bp downstream
Tssr139905	transcription start site region 139905	1096 bp downstream
Tssr139906	transcription start site region 139906	1201 bp downstream