rs262778397 SNP Detail

Summary

• ID
  rs262778397
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:7355614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCTTTGA CCCACTTCGC
  CAAAAGGTTT ATTTCTTTGT GGATAAACAC TACTGGAGGT AAGGTTCATT GGCTGGTACT
  TTTTTTTGCT AAGATTTGTA AGACAGGCAC AGAATGGAAT TTTTCAGAAG GCAGTCTTTC
  TATAAAAGCT TCAGACACCT TTGTCTTTAT GGGAGAGGCA GAAGGGGAAT ATAGTTCTGA
  R
  ATAGTCACTA TCAACCTGCT TCTTTTCTTT GGGCCTTTGG ATTGGTTTCT GATATAATTT
  CATGTTAGAG AGTGTTCAAA CTCCATGACT CCTTTCTACA ATTGGCAAAT CCAAAAGATG
  AAATGAGGAA CTGATTTTCT GAGTGACAAA TCACCAGAGG GAGTTGTCAT CAACGCAGTT
  GTCTTGTCTT CCTTATCTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376560377	MGP_WTSI_9_7355614	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262778397					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376560377	MGP_WTSI_9_7355614	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:7355614 () rs orientation: forward

Symbol	Name	Function Class
Mmp12	matrix metallopeptidase 12	within coordinates
Tssr83724	transcription start site region 83724	1718 bp downstream
Tssr83725	transcription start site region 83725	1581 bp downstream
Tssr83726	transcription start site region 83726	1486 bp downstream
Tssr83727	transcription start site region 83727	816 bp downstream
Tssr83728	transcription start site region 83728	791 bp downstream
Tssr83729	transcription start site region 83729	782 bp downstream
Tssr83730	transcription start site region 83730	300 bp downstream
Tssr83731	transcription start site region 83731	256 bp downstream
Tssr83732	transcription start site region 83732	223 bp downstream
Tssr83733	transcription start site region 83733	175 bp downstream
Tssr83734	transcription start site region 83734	210 bp upstream
Tssr83735	transcription start site region 83735	232 bp upstream
Tssr88070	transcription start site region 88070	836 bp upstream
Tssr88071	transcription start site region 88071	188 bp upstream