rs262784397 SNP Detail

Summary

• ID
  rs262784397
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:133501015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGGCACT GGAGTGCTGG
  GACTAAAGTC CTGAGCCACC ATGCCCAGCA ATTTTACAGC TTTTTCCGTG TCAGCTCCAT
  GCGTTAAAAC GGACATTTAT CCTAGTTTGC AAACTAGGGT TGTGCCTGGT CGCAACTCTC
  ACCTTTGCTG TATCAAGTTC TTTCAGGTCA GCCTTCCAGC CTGGTGCTAT GCTTAAGGGA
  R
  GGGGGTTCAG GAACACCTCA GCTATCCTAT GGTTTCTCTA ACTCGAGCTT CATTACAGCT
  AAAGAACCCG TGATCCAAAA AGAAAAAAAA AATCACATTG GTCTTAGTCA TCCTCTTGCC
  CAATCCAACT GTACGTATGG CTAGCTCAAG GCTAGCACTA AACAAGAGCA GAATACAAAC
  CCACACAAAG GGTCTGCGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss404650975	MGP_WTSI_X_131134805	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs262784397					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404650975	MGP_WTSI_X_131134805	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:133501015 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22942	CpG island 22942	810 bp proximal
Gla	galactosidase, alpha	within coordinates
Hnrnph2	heterogeneous nuclear ribonucleoprotein H2	913 bp upstream
Rr406169	regulatory region 406169	717 bp upstream
Tssr162002	transcription start site region 162002	945 bp upstream
Tssr162003	transcription start site region 162003	1006 bp upstream
Tssr164150	transcription start site region 164150	within coordinates
Tssr164151	transcription start site region 164151	38 bp downstream
Tssr164152	transcription start site region 164152	662 bp downstream
Tssr164153	transcription start site region 164153	710 bp downstream
Tssr164154	transcription start site region 164154	875 bp downstream
Tssr164155	transcription start site region 164155	1242 bp downstream