rs262796527 SNP Detail

Summary

• ID
  rs262796527
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:81910291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATACCTCC TCCCCTCTCT
  GTCCATGGCA GATGGTAGTG ACCTCTGCAC CATTAGGTTA TTTATCGTAA GGAGTGAGTC
  AGAGACATCT AACATACAAG TACGCTTAAC AGATGCTATG TATTGATAAG TTATATATAT
  GTATGGGTGC CTATGTATGA AACAGGGGAA CAGGCATTGG CTTCCTTAGA ACTGGAATTA
  Y
  AGATGGTTGT GAGGCACCTG ATGTGGATGC TGGGAATTGA ACTCAGGACC TCTGGAAGAG
  CAGTAAGTGC TCTTAACCAC TGCACCATCT CTCCAGCTGC CAGGTGTTAG TTATCGTCAT
  TAAAATTATA TTATCATTCA GCTAATAAGC TGGCTCTCTA GGTAAAGGTG CATGCTGCCA
  AGCCTGACGG CCTGAGTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325033176	CHEV_15_81856520	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262796527					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:81910291 () rs orientation: forward

Symbol	Name	Function Class
Rr506380	regulatory region 506380	1800 bp distal
Rr506381	regulatory region 506381	1552 bp proximal
Tssr132336	transcription start site region 132336	1935 bp upstream
Tssr132337	transcription start site region 132337	1964 bp upstream
Tssr132338	transcription start site region 132338	1999 bp upstream
Tssr135523	transcription start site region 135523	1759 bp downstream
Xrcc6	X-ray repair complementing defective repair in Chinese hamster cells 6	within coordinates