rs262799790 SNP Detail

Summary

• ID
  rs262799790
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:71151231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCCTCCC CCTTCCTGCC
  CACACCTGCC AGCTCCCAGC CGGAGGAACC CTGGCCGGCG CCCGGCCCCC GAGGGGCGTG
  CCTTCGGTGG GCGTGACGCG GGGCGTGGCT TCACAGAGGG CCTGGGTTTA TGAGGCTCCA
  CACATCACGC CACAGAAGTG CCAGAGACAG GGGAGAGATA GACGCACAGA TGAGGTCCAG
  Y
  TTGAGAAACA GAGAGGCAAG ATCTAGAGGG AAGTAAAGAG GGGAGGAAGA GAAAGGGAGG
  AGAGGCAAGA AACAGCAGGG TAGGGACAGA GCCTGCCCGG CAATCCAAGC TGGGCGTGGT
  GACCCGGCCA AACCGCGTTC AGCCCCACCC CCATGACGTC AACCCACAAT GCAGCGCGTT
  GTTGTGCCAT GTAGCGAGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375104829	MGP_WTSI_8_73222480	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262799790					SNP	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375104829	MGP_WTSI_8_73222480	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71151231 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20486	CpG island 20486	1570 bp distal
Gm11175	predicted gene 11175	580 bp downstream
Gm64347	predicted gene, 64347	within coordinates
Gm64349	predicted gene, 64349	within coordinates
Jund	jun D proto-oncogene	368 bp upstream
Rr368549	regulatory region 368549	176 bp downstream
Rr368550	regulatory region 368550	78 bp upstream
Rr664888	regulatory region 664888	1579 bp distal
Rr664889	regulatory region 664889	78 bp distal
Rr664890	regulatory region 664890	within coordinates
Rr664891	regulatory region 664891	77 bp proximal
Rr664892	regulatory region 664892	222 bp proximal
Rr664893	regulatory region 664893	1097 bp proximal
Tssr77799	transcription start site region 77799	36 bp downstream
Tssr77800	transcription start site region 77800	350 bp upstream
Tssr81647	transcription start site region 81647	254 bp upstream
Tssr81648	transcription start site region 81648	217 bp upstream