rs262812883 SNP Detail

Summary

• ID
  rs262812883
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113878439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGCTTTG CAATCCTTCC
  TGTATTTCAT CATTTCTCTG CTTATTTGTA CTAAAGAATA ATATTCATGA AGGATAGTTC
  AAACGCTGGG GACCTTTTAA ATGTGTAGAT AGGTTTAGTT ATTGCTTCCC CCCCCCCCCA
  CACACACACC GTGTTTCAGA TATTTGCTTT TATTCACTAT TTAGAAGCAG TCCTAAAGTT
  M
  CGTATCTGTG GAGAGTGCTA GAAAGAAATG AGGAATAGTG CTAACACTAA GTAGAAAAAG
  TCTAGAGGAT AGGAAGCTAA GATGCAGGAG AAGGAGGCTG GGAAGGAAGC TTGCTTTAGG
  GTACCAAGTT CTGCCTTTGC CTCCCCCTTC CAAGTGTTCC TGACCTTGAT CTTCATGGTG
  CTGGGAGCCA GTGCAGTGAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355315528	MGP_WTSI_2_113873694	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262812883					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355315528	MGP_WTSI_2_113873694	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113878439 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Tssr600	transcription start site region 600	389 bp upstream
Tssr601	transcription start site region 601	378 bp upstream
Tssr19429	transcription start site region 19429	661 bp downstream
Tssr19430	transcription start site region 19430	551 bp downstream
Tssr19431	transcription start site region 19431	467 bp downstream
Tssr19432	transcription start site region 19432	384 bp downstream
Tssr19433	transcription start site region 19433	163 bp upstream
Tssr19434	transcription start site region 19434	216 bp upstream
Tssr19435	transcription start site region 19435	1211 bp upstream
Tssr19436	transcription start site region 19436	1592 bp upstream
Tssr25660	transcription start site region 25660	640 bp upstream
Tssr25661	transcription start site region 25661	619 bp upstream
Tssr25662	transcription start site region 25662	516 bp upstream
Tssr25663	transcription start site region 25663	490 bp upstream
Tssr25664	transcription start site region 25664	449 bp upstream
Tssr25665	transcription start site region 25665	341 bp upstream
Tssr25666	transcription start site region 25666	195 bp downstream
Tssr25667	transcription start site region 25667	222 bp downstream
Tssr25668	transcription start site region 25668	258 bp downstream
Tssr25669	transcription start site region 25669	287 bp downstream
Tssr25670	transcription start site region 25670	1243 bp downstream
Tssr25671	transcription start site region 25671	1286 bp downstream
Tssr25672	transcription start site region 25672	1355 bp downstream
Tssr25673	transcription start site region 25673	1390 bp downstream
Tssr25674	transcription start site region 25674	1594 bp downstream
Tssr25675	transcription start site region 25675	1642 bp downstream
Tssr25676	transcription start site region 25676	1679 bp downstream
Tssr25677	transcription start site region 25677	1706 bp downstream