rs262815741 SNP Detail

Summary

• ID
  rs262815741
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:122370753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGCAGCA GTAACACAGA
  CGACACTGTT TATCAACCCG TATCCATGAA TGGACATTCA TTTTCGAAGG TTGCTTTCAG
  CAAAGGACAC ACATGCGTTG TTGCGGGTCA GGGGCATGGA TGAGTCCTTA AGATTACAGC
  TGTGTGTTGG CTTAGGTTGT AAAAGCTGTT TGCACGGGAA ATCCAAAGCA CATAAGGTTA
  R
  TTACTTCATT GTTTGCTTGC TTGCTTGTTT TGGTTTTTGG AGACAGGGTT TCTCTGTGTA
  GCCCTGGCTG TCCTGGAACT CACTCTGTAG ACCAGGCTGA CCTCGAACTC AGAAATCCTC
  CTGCCTCTGC CTCCCAAGTG CTGGGATTAA AGACACGCGT GCCACCACTG CCCCGGCTAC
  ATTGTTCTTT GGGGGGGCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366513550	MGP_WTSI_5_122682699	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262815741					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366513550	MGP_WTSI_5_122682699	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122370753 () rs orientation: forward

Symbol	Name	Function Class
Hvcn1	hydrogen voltage-gated channel 1	Intron
Rr619813	regulatory region 619813	1965 bp distal
Rr619814	regulatory region 619814	877 bp distal
Rr619815	regulatory region 619815	3 bp distal
Tssr48659	transcription start site region 48659	1650 bp downstream
Tssr48660	transcription start site region 48660	408 bp downstream
Tssr48661	transcription start site region 48661	303 bp downstream
Tssr48662	transcription start site region 48662	722 bp upstream
Tssr48663	transcription start site region 48663	891 bp upstream
Tssr53083	transcription start site region 53083	1931 bp downstream
Tssr53084	transcription start site region 53084	1962 bp downstream