rs262820666 SNP Detail

Summary

• ID
  rs262820666
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:80711237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCTTGGG TATCTGGATT
  GTAACGAATA CATTAAAAAT TAAAGTTTGT GAGAAGGGGC TTGGTAAAGC ATAGCGATGA
  TTGTATATGC CTGTGAAATC TATGTTCAAA ACTCCACTTC ATGCCAAGCC ATCTCTATAT
  ACCTGCGTGG CAAGTCTCTC TGCAGCCTCA GAAATTCTTT ACCAAATTGT ATGTGTTTTG
  Y
  TTTAAACAGA GAAATGAAAG AGGTCTCATT TCAGAGATCT GTTGCCAGGA GCCAGGAGAT
  TGAAGCTGAC AGCATCAAAG GGAAAACTGG CTGATGGCCC AAAGTGCATG AAAGCACACC
  ATAGTTAAAC CTTATGGAGA AAATGTGACT TTAATATCAC ACATGGTTTT TAACCATCAT
  AAATCATACT TTGCCTTAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358616743	MGP_WTSI_3_80607852	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262820666					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358616743	MGP_WTSI_3_80607852	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:80711237 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13281	CpG island 13281	762 bp distal
Gm66511	predicted gene, 66511	within coordinates
Gria2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	Noncoding-Transcript-Variant
Rr578666	regulatory region 578666	605 bp distal
Rr578667	regulatory region 578667	1522 bp proximal
Rr578668	regulatory region 578668	1603 bp proximal
Tssr33765	transcription start site region 33765	1329 bp upstream
Tssr33766	transcription start site region 33766	1313 bp upstream
Tssr33767	transcription start site region 33767	1286 bp upstream
Tssr33768	transcription start site region 33768	1258 bp upstream
Tssr33769	transcription start site region 33769	1200 bp upstream
Tssr33770	transcription start site region 33770	1160 bp upstream
Tssr33771	transcription start site region 33771	1090 bp upstream