rs262820848 SNP Detail

Summary

• ID
  rs262820848
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130549447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGTGTGGG GGAGGGGCCT TCCCTTCCTA
  ATAGTTTTGA GGAAGTGAGG CACCTGATGT TTGATACTGA CAAGGACCAG GTCACCTGCC
  TCTATCCTAG GGATGCAAAG TCATTGCTGA GCCATTGGAA AGGACTTGGG GACTGTAGGT
  K
  ATACCAGCGC TGTCCTTACT GGTATTCTGT CTCTGACTCC AGGCCCAGGA GGATGCCTAG
  CCTGCTAACA CCCAACCTTt taattaatta attaattaat taatATTTAT ATACATATAT
  ATGTGTATGT TTAGTTTTTT ATATGCTTCT                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321318861	CHEV_4_130378051	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262820848					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130549447 () rs orientation: forward

Symbol	Name	Function Class
Sdc3	syndecan 3	within coordinates
Tssr39279	transcription start site region 39279	44 bp upstream
Tssr39280	transcription start site region 39280	520 bp upstream
Tssr39281	transcription start site region 39281	586 bp upstream
Tssr39282	transcription start site region 39282	906 bp upstream
Tssr39283	transcription start site region 39283	976 bp upstream
Tssr39284	transcription start site region 39284	1177 bp upstream
Tssr39285	transcription start site region 39285	1247 bp upstream
Tssr39286	transcription start site region 39286	1314 bp upstream
Tssr39287	transcription start site region 39287	1340 bp upstream
Tssr39288	transcription start site region 39288	1375 bp upstream
Tssr39289	transcription start site region 39289	1504 bp upstream
Tssr39290	transcription start site region 39290	1511 bp upstream
Tssr39291	transcription start site region 39291	1659 bp upstream
Tssr39292	transcription start site region 39292	1736 bp upstream