rs262824616 SNP Detail

Summary

• ID
  rs262824616
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24598164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCAGAGGC GGAGAGGAAA
  ACTGTGCTTC CTAGAGCATT TCCTGGAGGA GCGTGGAGGA CATCCATGGA ACATCCCACA
  GGTTTATCCC AGACTGCCTG ATTTTCTTAT ATAACAAGAG TTCATGACTC CCATACTTTT
  GTGTCTAGGT AAGGTGCAAA GCTATGCTTT GTGGCAAAAT GGAATCCCAA GGAAGTGGGC
  R
  TGGGGGGGTA CCCCGGTGGC AGGAAATTCC CATGATCTTT CTGAGACCTC TAGAGAGAGA
  GAGGTTAAGT GTGGCTTTAG CTGGTACCTC CCTCTGACAT TACTCACATA TAGTATATAC
  TTGCTTAAGA CTACCTCTAC ACACATCCTT ATCTCCTCAG CCCCAAACTC AAGCAAATTC
  TGGCTCATTG CTCTGTCTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321495649	CHEV_5_23898984	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262824616					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24598164 () rs orientation: forward

Symbol	Name	Function Class
Abcb8	ATP-binding cassette, sub-family B member 8	497 bp upstream
Atg9b	autophagy related 9B	1023 bp upstream
Cpgi15597	CpG island 15597	1070 bp proximal
Rr112283	regulatory region 112283	within coordinates
Rr124925	regulatory region 124925	636 bp proximal
Rr398998	regulatory region 398998	242 bp upstream
Rr398999	regulatory region 398999	1003 bp upstream
Tssr45411	transcription start site region 45411	474 bp upstream
Tssr45412	transcription start site region 45412	1222 bp upstream
Tssr50315	transcription start site region 50315	1205 bp upstream
Tssr50316	transcription start site region 50316	1159 bp upstream
Tssr50317	transcription start site region 50317	1135 bp upstream
Tssr50318	transcription start site region 50318	672 bp upstream
Tssr50319	transcription start site region 50319	468 bp upstream