rs262824946 SNP Detail

Summary

• ID
  rs262824946
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134485972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATTGTCT TATTTTATTA
  TTATTTAAGA CAATATATGT CTTATTCAGG CTCCAAATCC CTGTAGAGCT AAGAAAAGTT
  TTGCCTTCTT CAAGAATTGC TGAACTGTTT TAGAGGCCAG GTACTTCGAT AGAGCTTATT
  AAAGACTGGG GCTTTTCTCC CCTTCACTGA AAAATGTTTT GTATTTTTTA TATTTAAAAA
  W
  ATTTTTTAAA TGTGTGTTGA GCTGAAGGGG TCTGCAACCC TATAGGTGGA ACAATATGAA
  CTAACCAGTA CCCCCAGAGC TCATGTCTCT AGCTGCATAT ATATCAGAAG ATGACCTAGT
  TGGCCATCAT TGGGAAAAGA GGCCCCTTGG TCTTGCAAAC TTTATATGCC CCAGTACAGG
  GGAATGCCAG GGCCAAGAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	SEA/GnJ	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351521273	MGP_WTSI_1_136454811	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	SEA/GnJ	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262824946					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351521273	MGP_WTSI_1_136454811	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134485972 () rs orientation: forward

Symbol	Name	Function Class
Cpgi772	CpG island 772	1174 bp distal
Cpgi773	CpG island 773	1652 bp proximal
Gm57134	predicted gene, 57134	1132 bp upstream
Kdm5b	lysine demethylase 5B	1944 bp upstream
Rr367005	regulatory region 367005	974 bp downstream
Rr367006	regulatory region 367006	1807 bp upstream
Rr418945	regulatory region 418945	1143 bp distal
Rr418947	regulatory region 418947	1800 bp distal
Rr418948	regulatory region 418948	781 bp distal
Rr418949	regulatory region 418949	1454 bp proximal
Tssr8904	transcription start site region 8904	1923 bp upstream
Tssr8905	transcription start site region 8905	1956 bp upstream
Tssr8906	transcription start site region 8906	1980 bp upstream
Tssr13798	transcription start site region 13798	1232 bp upstream