rs262825772 SNP Detail

Summary

• ID
  rs262825772
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135145195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGAGCCG AAACCGAAAG
  GAGCCCGGCG TCGGTCCGGA GCCGCCCGCT CCCCTCCCCC TTGCCTTTCT CTGCCCGAGT
  GACGCCGGCC TAGCGCCGAC TAGGCCCCGG CTCCTCCTCT GCCCGGCTCT GGACCCTGCC
  CCGCACCCAC CCCTTTCTCC TCCGCCTCTT CCTCTCCCAC CCGGGGCTCG TCTTCCTTTC
  W
  AGAGGCCGGG AAGTTAAACT TGTAACCACC TCTCGGCGCT TCCCGTCACC CTCTCGCCCT
  CTCTGGGGCG AAGCGCGGAT CTCGGTAGCT GGTGGCTCCG CCACCCCGCC CCGCCCTGCC
  GGGATCGCGG CGGTTTTCAG GGTTCTGGAG TCAGCAGGGT TTCTCCGAGG CCCTGGCGAG
  TCGCTGACCT GCTCCGTTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359834788	MGP_WTSI_3_135102398	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262825772					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359834788	MGP_WTSI_3_135102398	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135145195 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930539J05Rik	RIKEN cDNA 4930539J05 gene			769 bp upstream
Cpgi13855	CpG island 13855			within coordinates
Rr367562	regulatory region 367562			1134 bp downstream
Rr367563	regulatory region 367563			990 bp downstream
Rr398041	regulatory region 398041			741 bp upstream
Rr585708	regulatory region 585708			1394 bp distal
Rr585709	regulatory region 585709			1190 bp distal
Rr585710	regulatory region 585710			859 bp distal
Rr585711	regulatory region 585711			213 bp distal
Rr585712	regulatory region 585712			68 bp distal
Rr585713	regulatory region 585713			within coordinates
Rr585714	regulatory region 585714			1434 bp proximal
Tssr1058	transcription start site region 1058			828 bp downstream
Tssr31809	transcription start site region 31809			1308 bp downstream
Tssr31810	transcription start site region 31810			1281 bp downstream
Tssr31811	transcription start site region 31811			1131 bp downstream
Tssr31812	transcription start site region 31812			1044 bp downstream
Tssr31813	transcription start site region 31813			982 bp downstream
Tssr31814	transcription start site region 31814			949 bp downstream
Tssr31815	transcription start site region 31815			894 bp downstream
Tssr31816	transcription start site region 31816			850 bp downstream
Tssr31817	transcription start site region 31817			654 bp downstream
Tssr31818	transcription start site region 31818			381 bp downstream
Tssr31819	transcription start site region 31819			371 bp downstream
Tssr31820	transcription start site region 31820			336 bp downstream
Tssr31821	transcription start site region 31821			260 bp downstream
Tssr31822	transcription start site region 31822			within coordinates
Tssr31823	transcription start site region 31823			8 bp upstream
Tssr31824	transcription start site region 31824			36 bp upstream
Tssr35782	transcription start site region 35782			1428 bp upstream
Tssr35783	transcription start site region 35783			796 bp upstream
Tssr35784	transcription start site region 35784			729 bp upstream
Tssr35785	transcription start site region 35785			937 bp downstream
Ube2d3	ubiquitin-conjugating enzyme E2D 3			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant