rs262839040 SNP Detail

Summary

• ID
  rs262839040
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45109677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTGGGGGA GGGGCGGTGG
  TCCGGATCCG GAGGCGCAAC CTGGAGGGGT CGCAGGGTTC TGGGCTCCGG GTCACTGAGA
  CCCTGGGGAG GGGATGACTT CGAGGTCCTT TTCTGGGTGT CTCACAAAAG AGAATTTTGG
  GGCCTGAGAA CATGGATCTG GGGATGGGCT GAGTGTGGGG TAATGTCTGT AAATGCAAAG
  S
  GAACCTCCAT ATGTCCAATT GCACACAATG AAGGGATATG TCACGTCATG AGGAAGTCTG
  GTATTCCAAA GATTCTAGAG ATCTCCTTGA GGGAATGGAA GGGATGCCCA GAAGTATAGG
  GTTTTAGGTT CACCATAGGA ACTAAGATTG TTTGCTTGTT TTTCTGTTTT CTGTAACCCA
  GGAGGTCGTG AAGCCCTTTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371177633	MGP_WTSI_7_52715623	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262839040					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371177633	MGP_WTSI_7_52715623	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45109677 () rs orientation: forward

Symbol	Name	Function Class
Bax	BCL2-associated X protein	1444 bp downstream
Cpgi19060	CpG island 19060	823 bp distal
Cpgi19061	CpG island 19061	119 bp distal
Ftl1	ferritin light polypeptide 1	369 bp upstream
Gm10252	predicted gene 10252	within coordinates
Gm73429	predicted gene, 73429	within coordinates
Gm73431	predicted gene, 73431	756 bp upstream
Rr380754	regulatory region 380754	within coordinates
Rr646450	regulatory region 646450	within coordinates
Rr646451	regulatory region 646451	144 bp distal
Rr646452	regulatory region 646452	266 bp proximal
Rr646453	regulatory region 646453	767 bp proximal
Rr646454	regulatory region 646454	1200 bp proximal
Tssr66541	transcription start site region 66541	565 bp downstream
Tssr66542	transcription start site region 66542	811 bp upstream
Tssr72392	transcription start site region 72392	1905 bp upstream
Tssr72393	transcription start site region 72393	1840 bp upstream
Tssr72394	transcription start site region 72394	1694 bp upstream
Tssr72395	transcription start site region 72395	828 bp upstream
Tssr72396	transcription start site region 72396	796 bp upstream
Tssr72397	transcription start site region 72397	522 bp upstream
Tssr72398	transcription start site region 72398	372 bp upstream
Tssr72399	transcription start site region 72399	669 bp downstream
Tssr72400	transcription start site region 72400	707 bp downstream