rs262841826 SNP Detail

Summary

• ID
  rs262841826
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114268704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGCGCGCC TACCGTGAGC
  ACGGCTGCAG GAGTCCCGGA GGTCCGTGCT CGGCGCAGGC ATGATCGGCC AGAAGACCCT
  ATACTCTTTC TTCTCTCCGA CCCCCACAGG GAAGCGGACC ACGCGCAGCC CGGAGCCGGT
  CCCAGGGAGC GGAGTGGCGG CCGAGATCGG CGGCGATGCC GTGGTGAGAC GAGCGGGGTA
  K
  CGCGGGACGC GGGGGTACGG CGGGGTCCCG GGCAGGAGCG CCACGCACGC CGCTTGCTCG
  GACAGACTGG GACACCTTAG GGGTTCAACA CAGCCGCGCG CTGTCGGCCG CCGCCACGCC
  GAGGCACTAG CCAATAGGGA TGGGGCACGG TCGCCGCAGA GCCAATCAGT GTGCAGCGTG
  CCCGCCCTGC TCCTCGCGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366325802	MGP_WTSI_5_114580652	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262841826					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366325802	MGP_WTSI_5_114580652	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114268704 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16310	CpG island 16310	within coordinates
Gm73237	predicted gene, 73237	within coordinates
Rr378486	regulatory region 378486	1896 bp downstream
Rr617829	regulatory region 617829	247 bp distal
Rr617830	regulatory region 617830	61 bp proximal
Rr617831	regulatory region 617831	860 bp proximal
Tssr48056	transcription start site region 48056	267 bp downstream
Tssr48057	transcription start site region 48057	199 bp downstream
Tssr48058	transcription start site region 48058	514 bp upstream
Tssr48059	transcription start site region 48059	541 bp upstream
Tssr48060	transcription start site region 48060	1567 bp upstream
Tssr52695	transcription start site region 52695	62 bp downstream
Tssr52696	transcription start site region 52696	943 bp downstream
Ung	uracil DNA glycosylase	within coordinates