rs262851330 SNP Detail

Summary

• ID
  rs262851330
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156077504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCG AGGCGCACCG TGGCTGGGGG
  Y
  TTCGACTCCC CGGAGCTGAT ATCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321444388	CHEV_4_155367156	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262851330					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156077504 () rs orientation: forward

Symbol	Name	Function Class
B3galt6	UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	398 bp upstream
Cpgi15496	CpG island 15496	within coordinates
Rr377473	regulatory region 377473	within coordinates
Rr606629	regulatory region 606629	1685 bp distal
Rr606630	regulatory region 606630	452 bp distal
Rr606631	regulatory region 606631	within coordinates
Rr606632	regulatory region 606632	349 bp distal
Rr606633	regulatory region 606633	75 bp distal
Rr606634	regulatory region 606634	206 bp proximal
Rr606635	regulatory region 606635	341 bp proximal
Sdf4	stromal cell derived factor 4	within coordinates
Tssr1404	transcription start site region 1404	101 bp downstream
Tssr40748	transcription start site region 40748	634 bp downstream
Tssr40749	transcription start site region 40749	96 bp upstream
Tssr40750	transcription start site region 40750	183 bp upstream
Tssr40751	transcription start site region 40751	258 bp upstream
Tssr40752	transcription start site region 40752	401 bp upstream
Tssr44987	transcription start site region 44987	705 bp upstream
Tssr44988	transcription start site region 44988	373 bp upstream