rs262854502 SNP Detail

Summary

• ID
  rs262854502
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:45007070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCCCCAGC GGGGCGGCCA
  GCTGAGGATT TTATTTTCCT ATTTTATTTG AAGTAAAGGC TTCATCTCGG CTTTGGGGGT
  GTTTGCCAAC GTCTCTACTG ACAGGAACCA GCAAACTTCA GGACTCAAAT GAGCATCTTA
  ATTTATTGAT GCAAAGCAGG TCTGCTCACA GATCCCCCAT CCCCGGCGCT CTCCCCCCCA
  C
  CCCCCCACCC CCGCGAACTT CGCTCCCTCT GTCGGTCCCG GAGCACGTGG GGGGGGGGGG
  AATCGGCGGC CCGCACCCCC CTGCAACACC CGACCCCGCC CTGGTACCGC GCGACCCCCG
  CCCCGCTCCC GGTCAGCTGA CCTGGCTCGC CGGCCTGCTC CCCGCCCGCC GCCCTGTTTC
  CGGTCCCCCG GGTCCGCGAG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353808089	MGP_WTSI_2_44972578	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262854502					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353808089	MGP_WTSI_2_44972578	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:45007070 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11634	CpG island 11634			within coordinates
Gm28643	predicted gene 28643			1147 bp upstream
Rr373117	regulatory region 373117			within coordinates
Rr556444	regulatory region 556444			within coordinates
Rr556445	regulatory region 556445			327 bp proximal
Tssr17636	transcription start site region 17636			173 bp upstream
Tssr23988	transcription start site region 23988			60 bp upstream
Tssr23989	transcription start site region 23989			243 bp downstream
Tssr23990	transcription start site region 23990			291 bp downstream
Tssr23991	transcription start site region 23991			342 bp downstream
Tssr23992	transcription start site region 23992			368 bp downstream
Tssr23993	transcription start site region 23993			465 bp downstream
Zeb2	zinc finger E-box binding homeobox 2			Intron
				Noncoding-Transcript-Variant