rs262854890 SNP Detail

Summary

• ID
  rs262854890
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:144368446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGCTCTGC TATTTTGTAA
  ATAACTAGCA GGGCAGAAAC CTTATGGGTC TTTTCTTTGA GGTGGGGAGG AGTCCTCTTA
  ATCCAGTATT TGCAACTTGC ACTGTAGCTT CAACGATTGT GGCTACATTA TTATTCAATT
  ATAATGTACA TATTCATCTC ACTTTTATAA TCAACATTTT GCATCCTCAT TTCGCCCCCC
  S
  CTCCCCCGAG ACAGGGTTTC TCCGTGTAAC AGCCCTAGCT GTTATGGAGC TCTACCTGTA
  GACCAAGCTG GCCTCCAACT CACAGAGATC CACCTGCTTC TGACTCCCAA GTGCTGGGAT
  TAAAGGAATG AGACACCATG CCTGGCTTAC AATTTTTCAT GTAACAATTT GTTGTTCAGT
  GGTGAGGTCA TTTTTTTTTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355984724	MGP_WTSI_2_144352262	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	C	G	G	C	C	C	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262854890					SNP	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	C	G	G	C	C	C	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355984724	MGP_WTSI_2_144352262	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144368446 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12356	CpG island 12356	576 bp proximal
Dzank1	double zinc ribbon and ankyrin repeat domains 1	within coordinates
Polr3f	polymerase (RNA) III (DNA directed) polypeptide F	1219 bp upstream
Rr566471	regulatory region 566471	375 bp distal
Rr566472	regulatory region 566472	333 bp proximal
Rr566473	regulatory region 566473	862 bp proximal
Rr566474	regulatory region 566474	1233 bp proximal
Tssr20540	transcription start site region 20540	989 bp upstream
Tssr20541	transcription start site region 20541	1212 bp upstream
Tssr20542	transcription start site region 20542	1265 bp upstream
Tssr26607	transcription start site region 26607	815 bp downstream
Tssr26608	transcription start site region 26608	899 bp downstream
Tssr26609	transcription start site region 26609	913 bp downstream
Tssr26610	transcription start site region 26610	975 bp downstream
Tssr26611	transcription start site region 26611	1000 bp downstream