rs262856716 SNP Detail

Summary

• ID
  rs262856716
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23494161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAAGTTT TGGGGATCCC
  GGGGCTTCGT GGCGTTTTTT ATCTGCCTCA GTGGAAACCG GAAGAGGCGA CAGGGATGCC
  CTTCGAGTCA TTCGGTCTTT CTTTAGTGAA GTCGCGAAGG AGTTGGGAAC TTGGGATTCT
  GAAGTGAATA TTTTCGGGTC GCCCAATCTT GGTGACAACG AATATCTGTG ACTCCGAAGT
  Y
  TCCTGTAATT TCCAAGTCTG TAACTGAAGA GGCCAAGGTA GCACATCAGC CTACCTGTAT
  AGTCGTTTGT TCTTCAGGGA TCTTTTGGTG AAAAGGCACT TTTGGTTCTT TTCTCCAGGG
  ACCCTCAGAG CTCCAGTCCC CTAACTGGTG ATCTTACTGT GGCAACAACC ACAAAAGTAG
  ACACGAACAA AGGAGGATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324288369	CHEV_13_23401860	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262856716					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23494161 () rs orientation: forward

Symbol	Name	Function Class
4930557F10Rik	RIKEN cDNA 4930557F10 gene	within coordinates
4930597G05Rik	RIKEN cDNA 4930597G05 gene	within coordinates
Cpgi5346	CpG island 5346	104 bp distal
n-TIaat9	nuclear encoded tRNA isoleucine 9 (anticodon AAT)	866 bp upstream
Rr475821	regulatory region 475821	within coordinates
Tssr121691	transcription start site region 121691	162 bp downstream