rs262858143 SNP Detail

Summary

• ID
  rs262858143
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:175459061 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGGCACTAT CGGGTGGTGT TTCCTTCCAG
  TCCCTACCCA AAGAAATGCC ATTTGTGTTC TCATCAGAAA TTGGAAAAAC CAATAAATCT
  TCATTGATGC TCTTATTTTA TTTTAATCAC AATACGATCT AGAAAAGAAG CACAACTCAC
  R
  AATAGGCCCC CAAACCAAGC ACTATACGTT TCAAATGAAG TAGAGATGTC AAAGTGATGA
  GACACCCTCA AACCACACAT TTGAGTAGAG ATGCAGGGTG TTCACCATCT TGCCCATGGC
  AAAGCATGAG CTAGATTCTA AAGTCCTAGG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320151882	CHEV_1_177561626	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262858143					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:175459061 () rs orientation: forward

Symbol	Name	Function Class
Kmo	kynurenine 3-monooxygenase	698 bp upstream
Rr396618	regulatory region 396618	323 bp upstream
Tssr10313	transcription start site region 10313	473 bp upstream
Tssr10314	transcription start site region 10314	501 bp upstream
Tssr10315	transcription start site region 10315	520 bp upstream
Tssr10316	transcription start site region 10316	549 bp upstream
Tssr10317	transcription start site region 10317	569 bp upstream
Tssr10318	transcription start site region 10318	601 bp upstream
Tssr10319	transcription start site region 10319	609 bp upstream
Tssr10320	transcription start site region 10320	625 bp upstream
Tssr10321	transcription start site region 10321	646 bp upstream
Tssr10322	transcription start site region 10322	660 bp upstream
Tssr10323	transcription start site region 10323	674 bp upstream