rs262873627 SNP Detail

Summary

• ID
  rs262873627
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172331677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTTAATTTC CCCTTTCTGC TGTAACAAAC
  TATAAACTTA GCCACACACT GGATGCTCTG ATAGTTTAGA AACTCAGCGG GAGATGCTGG
  CGggggtggg gtgggggggt ggggatgggg tggggggggc ggggggatgg ggggtggggt
  A
  gggCATACTC ACTGGGACTg aggagctagg ggagggtcca tttccttttc ttttctggcc
  tcatctccat tgcttggttt gtgaccctgc ttgacaccca ccctgtcttc acttctccca
  tgctgccttc ccctttcact tactgagaat                                 
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320125768	CHEV_1_174434241	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262873627					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172331677 () rs orientation: forward

Symbol	Name	Function Class
Rr29013	regulatory region 29013	76 bp distal
Rr29014	regulatory region 29014	123 bp proximal
Tagln2	transgelin 2	within coordinates
Tssr10218	transcription start site region 10218	1518 bp downstream
Tssr10219	transcription start site region 10219	1153 bp upstream
Tssr10220	transcription start site region 10220	1641 bp upstream
Tssr10221	transcription start site region 10221	1683 bp upstream
Tssr10222	transcription start site region 10222	1769 bp upstream