rs262879712 SNP Detail

Summary

• ID
  rs262879712
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115151596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGAGGGCCG AGAGAAAGTC
  CCAGAATGAA GGGCCCCGGC CACCACGTCA GGGACCCGAG GCTAGGGGAG AGCTGCCTCT
  CCTCCCTCTA ATGGCGTCTC CTTCCTCCTA CGTCACACCC CTCGTCACGT GACCGCGGTG
  GGCGGAGTCG GCGGCGGGCG AGCCTGGGCC TGTTTCCGCG TCCGCACGAA CCGGCTCAGC
  R
  TCCCGGGAAT CCTGCGGTGG GAAGGAGCTG ATCTTTGCGA TCTGACCCCA CTCTGATGGA
  ATAGAATACA GGACATGATC GCCCGGCCCG AGGAATGGTC CCAAAGCGGA TAGCCATCAC
  ACCAGGGGTC ATCACACGCA AAGTCCGGCC AAGGTGCCCT TGAGTCTCTT TCTCTGGGCG
  CACAAATCCG GGCTCATGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323484106	CHEV_10_114752747	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262879712					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115151596 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2204	CpG island 2204	within coordinates
Gm10752	predicted gene 10752	within coordinates
Gm67120	predicted gene, 67120	within coordinates
Rab21	RAB21, member RAS oncogene family	56 bp upstream
Rr402237	regulatory region 402237	within coordinates
Rr402238	regulatory region 402238	469 bp upstream
Rr439193	regulatory region 439193	102 bp distal
Rr439194	regulatory region 439194	52 bp distal
Rr439195	regulatory region 439195	within coordinates
Rr439196	regulatory region 439196	115 bp proximal
Rr439197	regulatory region 439197	1839 bp proximal
Rr439198	regulatory region 439198	1980 bp proximal
Tssr95806	transcription start site region 95806	637 bp downstream
Tssr95807	transcription start site region 95807	597 bp downstream
Tssr95808	transcription start site region 95808	21 bp downstream
Tssr95809	transcription start site region 95809	within coordinates
Tssr99318	transcription start site region 99318	804 bp upstream
Tssr99319	transcription start site region 99319	761 bp upstream
Tssr99320	transcription start site region 99320	169 bp upstream
Tssr99321	transcription start site region 99321	76 bp upstream
Tssr99322	transcription start site region 99322	67 bp upstream