rs262886340 SNP Detail

Summary

• ID
  rs262886340
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:140428088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCTCAGC CAAGAAGCTC
  TGGACCCTTG CCAGCCAGCT CTTTGGAAAG TTGCACCCAG GGTTCTTTGA CCAGCCCGAG
  CTCCTTCAGA GCCAAAACAG TAGTCAGTGC AGGGCCAGAG CAGCTCCTCT GGGCCTGTCC
  TGAAGGCATG ACTCCCACCC TTATCTTGGA GCTGGGTAGG GGTGAGCTCA CCACACCAGA
  Y
  GGGGAGCTCT CTTTGCTTGT AACTACTCGA GACTCCCATG TCTCCACGGG GCAAGGCTTG
  GGTCTGCAGG ATGCAATATC AGCAGTACCA GGGATGGGAA CATGAGGGCC AGGAATGAGA
  TGCAACAGGG AGGGCATCCC AGCACCTGGT CACCCTCTTG TCCATGGACA GAGCCAGCCA
  TGGCAGAGGA GGTATGGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373420012	MGP_WTSI_7_148034074	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262886340					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373420012	MGP_WTSI_7_148034074	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:140428088 () rs orientation: forward

Symbol	Name	Function Class
Cimap1a	ciliary microtubule associated protein 1A	within coordinates
Gm45785	predicted gene 45785	within coordinates
Rr657759	regulatory region 657759	93 bp distal
Rr657760	regulatory region 657760	1204 bp proximal
Scgb1c1	secretoglobin, family 1C, member 1	1406 bp downstream
Tssr69848	transcription start site region 69848	415 bp downstream
Tssr69849	transcription start site region 69849	396 bp downstream
Tssr69850	transcription start site region 69850	382 bp downstream
Tssr69851	transcription start site region 69851	362 bp downstream
Tssr69852	transcription start site region 69852	346 bp downstream
Tssr69853	transcription start site region 69853	327 bp downstream