rs262887989 SNP Detail

Summary

• ID
  rs262887989
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85703406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGAATCTG CCCGGAGACC
  GCGCTGGCGT CACTGAGCTG AATAGGCCCA TATATGGGCA GAGCTTCCGT AACGTCAGCG
  GGGAAAGCCC CGGCGCACTC TGCTGGGCGG GGTCATGCTT GCACATTCCG CGTTTTGTCC
  TGGGTAGCTT GTTCCCCGCC ACTGCCCGCC TGCGCAGCGT CTGGTGCCAG GACTCAGGGG
  M
  TAGGAGGTCT GGGCGTTTGT ACTGAACCTT ATGATACCTG AAAGGAGCGA GCTACAAACA
  GCACCGTGCT TGGGGTAGCC CAATCTTCTC CCTCCATCCG CCCAGCTTGG AAGAAAAAAG
  AGACCACAGA AATTAATAAA GACAATTTTT TTTTTACTTA AATAGATTCA ATAAAAAGTC
  AAACACACAC ACACAAACAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375408847	MGP_WTSI_8_87500676	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262887989					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375408847	MGP_WTSI_8_87500676	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85703406 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20738	CpG island 20738	within coordinates
Junb	jun B proto-oncogene	132 bp downstream
Prdx2	peroxiredoxin 2	1966 bp downstream
Rr187033	regulatory region 187033	within coordinates
Rr382406	regulatory region 382406	within coordinates
Rr401033	regulatory region 401033	1881 bp upstream
Tssr78490	transcription start site region 78490	35 bp downstream
Tssr78491	transcription start site region 78491	20 bp downstream
Tssr78492	transcription start site region 78492	987 bp upstream
Tssr78493	transcription start site region 78493	1079 bp upstream
Tssr78494	transcription start site region 78494	1239 bp upstream
Tssr78495	transcription start site region 78495	1390 bp upstream
Tssr78496	transcription start site region 78496	1806 bp upstream
Tssr78497	transcription start site region 78497	1836 bp upstream
Tssr82215	transcription start site region 82215	440 bp upstream
Tssr82216	transcription start site region 82216	725 bp downstream
Tssr82217	transcription start site region 82217	1097 bp downstream
Tssr82218	transcription start site region 82218	1216 bp downstream
Tssr82219	transcription start site region 82219	1233 bp downstream
Tssr82220	transcription start site region 82220	1291 bp downstream
Tssr82221	transcription start site region 82221	1324 bp downstream
Tssr82222	transcription start site region 82222	1345 bp downstream
Tssr82223	transcription start site region 82223	1674 bp downstream
Tssr82224	transcription start site region 82224	1747 bp downstream
Tssr82225	transcription start site region 82225	1932 bp downstream